RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG4	YNL223W	AIM26	P32858	118 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	SLD2	P34252	453 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	SET3	P36124	751 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	BIT2	P38346	545 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	FSH1	P38777	243 aa	Known RBP	6.11	□□□□□ -1.43
ATG4	YNL223W	SPC97	P38863	823 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	PRM9	P39551	298 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	STL1	P39932	569 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	DSN1	P40568	576 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	MAF1	P41910	395 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	YFL052W	P43551	465 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	TAF1	P46677	1066 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	MNN11	P46985	422 aa	Known RBP	6.11	□□□□□ -1.43
ATG4	YNL223W	RTA1	P53047	317 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	YGL140C	P53120	1219 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	YGR127W	P53275	312 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	YPR003C	P53394	754 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	VPS9	P54787	451 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	SPG3	Q04398	127 aa	Predicted RBP	6.11	□□□□□ -1.43
ATG4	YNL223W	FAR8	Q05040	523 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	ADE13	Q05911	482 aa	Known RBP	6.11	□□□□□ -1.43
ATG4	YNL223W	MRI1	Q06489	411 aa	Known RBP	6.11	□□□□□ -1.43
ATG4	YNL223W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	6.11	□□□□□ -1.43	not detected
ATG4	YNL223W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	6.11	□□□□□ -1.43	not detected
ATG4	YNL223W	GPM3	Q12326	303 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	ARP7	Q12406	477 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	AI5_ALPHA	Q9ZZX1	630 aa		6.11	□□□□□ -1.43
ATG4	YNL223W	TEF1	P02994	458 aa	Known RBP	6.1	□□□□□ -1.43
ATG4	YNL223W	YIH1	P25637	258 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	HSP78	P33416	811 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	SMF2	P38778	549 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	PPE1	P38796	400 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	PCL10	P53124	433 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	YNL144C	P53907	740 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	KTR5	P53966	522 aa	Predicted RBP	6.1	□□□□□ -1.43
ATG4	YNL223W	CEG1	Q01159	459 aa	Predicted RBP	6.1	□□□□□ -1.43
ATG4	YNL223W	PNG1	Q02890	363 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	YMR160W	Q03823	816 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	ARA2	Q04212	335 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	YML083C	Q04526	418 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	ECM22	Q05958	814 aa	Predicted RBP	6.1	□□□□□ -1.43
ATG4	YNL223W	NRT1	Q08485	598 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	6.1	□□□□□ -1.43	not detected
ATG4	YNL223W	LCB4	Q12246	624 aa		6.1	□□□□□ -1.43
ATG4	YNL223W	EFG1	Q3E705	233 aa	Known RBP	6.1	□□□□□ -1.43
ATG4	YNL223W	PRC1	P00729	532 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	MET16	P18408	261 aa	Predicted RBP	6.09	□□□□□ -1.43
ATG4	YNL223W	CDC10	P25342	322 aa	Known RBP	6.09	□□□□□ -1.43
ATG4	YNL223W	DEP1	P31385	405 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	UTR2	P32623	467 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	LOS1	P33418	1100 aa	Predicted RBP	6.09	□□□□□ -1.43
ATG4	YNL223W	WHI3	P34761	661 aa	Known RBP	6.09	□□□□□ -1.43
ATG4	YNL223W	YBP1	P38315	674 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	OTU2	P38747	307 aa	Known RBP	6.09	□□□□□ -1.43
ATG4	YNL223W	LAM1	P38851	1228 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	IML2	P47031	731 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	VPS25	P47142	202 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	MTD1	Q02046	320 aa	Known RBP	6.09	□□□□□ -1.43
ATG4	YNL223W	PMT7	Q06644	662 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	CUE5	Q08412	411 aa	Known RBP	6.09	□□□□□ -1.43
ATG4	YNL223W	UBR2	Q07963	1872 aa		6.09	□□□□□ -1.43
ATG4	YNL223W	ERR1	P0CX10	437 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	ERR2	P0CX11	437 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	GID7	P25569	745 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	PGS1	P25578	521 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	KIP2	P28743	706 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	PMI40	P29952	429 aa	Known RBP	6.09	□□□□□ -1.44
ATG4	YNL223W	KES1	P35844	434 aa	Known RBP	6.09	□□□□□ -1.44
ATG4	YNL223W	YKR051W	P36142	418 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	ETR1	P38071	380 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	YBR032W	P38223	100 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	YBR225W	P38321	900 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	EDC3	P39998	551 aa	Known RBP	6.09	□□□□□ -1.44
ATG4	YNL223W	YAT2	P40017	923 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	RAD26	P40352	1085 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	ATM1	P40416	690 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	MID1	P41821	548 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	ERR3	P42222	437 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	LSC1	P53598	329 aa	Known RBP	6.09	□□□□□ -1.44
ATG4	YNL223W	SLT2	Q00772	484 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	HER2	Q03557	464 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	GRX8	Q05926	109 aa		6.09	□□□□□ -1.44
ATG4	YNL223W	SSC1	P0CS90	654 aa	Known RBP	6.08	□□□□□ -1.44
ATG4	YNL223W	MAS1	P10507	462 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	ADY2	P25613	283 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	RAD27	P26793	382 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	DAL1	P32375	460 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	TSA1	P34760	196 aa	Known RBP	6.08	□□□□□ -1.44
ATG4	YNL223W	SQT1	P35184	431 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	UBP14	P38237	781 aa	Known RBP	6.08	□□□□□ -1.44
ATG4	YNL223W	YEL028W	P39989	153 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	JHD1	P40034	492 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	TDA10	P42938	290 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	YFL012W	P43580	148 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	RPS10B	P46784	105 aa	Known RBP	6.08	□□□□□ -1.44
ATG4	YNL223W	SNG1	P46950	547 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	TEP1	P53916	434 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	YMR102C	Q03177	834 aa		6.08	□□□□□ -1.44
ATG4	YNL223W	BUD22	Q04347	519 aa	Known RBP	6.08	□□□□□ -1.44
ATG4	YNL223W	EMI2	Q04409	500 aa	Known RBP	6.08	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 141.7 ms