RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ADRA2BP18089 450 aa24.82■■□□□ 1.56
LIME1-210ENST00000621325 GRAPQ13588 217 aa24.82■■□□□ 1.56
LIME1-210ENST00000621325 NTRK3Q16288 839 aa24.82■■□□□ 1.56
LIME1-210ENST00000621325 GRAPLQ8TC17 118 aaPredicted RBP24.82■■□□□ 1.56
LIME1-210ENST00000621325 ZNF396Q96N95 335 aaPredicted RBP24.82■■□□□ 1.56
LIME1-210ENST00000621325 ANKIB1Q9P2G1 1089 aa24.82■■□□□ 1.56
LIME1-210ENST00000621325 ESPNB1AK53 854 aa24.81■■□□□ 1.56
LIME1-210ENST00000621325 RANBP6O60518 1105 aaKnown RBP24.81■■□□□ 1.56
LIME1-210ENST00000621325 CKAP2LQ8IYA6 745 aa24.81■■□□□ 1.56
LIME1-210ENST00000621325 CCDC69A6NI79 296 aa24.81■■□□□ 1.56
LIME1-210ENST00000621325 GPR101Q96P66 508 aaPredicted RBP24.81■■□□□ 1.56
LIME1-210ENST00000621325 MAP3K11Q16584 847 aa24.8■■□□□ 1.56
LIME1-210ENST00000621325 ALG1Q9BT22 464 aa24.8■■□□□ 1.56
LIME1-210ENST00000621325 EVX2Q03828 476 aa24.8■■□□□ 1.56
LIME1-210ENST00000621325 TNMDQ9H2S6 317 aa24.8■■□□□ 1.56
LIME1-210ENST00000621325 UBR3Q6ZT12 1888 aa24.79■■□□□ 1.56
LIME1-210ENST00000621325 KRT27Q7Z3Y8 459 aa24.79■■□□□ 1.56
LIME1-210ENST00000621325 RNF41Q9H4P4 317 aaPredicted RBP24.79■■□□□ 1.56
LIME1-210ENST00000621325 AATFQ9NY61 560 aaKnown RBP eCLIP24.79■■□□□ 1.56
LIME1-210ENST00000621325 PDS5AQ29RF7 1337 aaKnown RBP24.79■■□□□ 1.56
LIME1-210ENST00000621325 ATL3Q6DD88 541 aa24.78■■□□□ 1.56
LIME1-210ENST00000621325 CLSTN2Q9H4D0 955 aa24.78■■□□□ 1.56
LIME1-210ENST00000621325 DDX19AQ9NUU7 478 aaKnown RBP24.78■■□□□ 1.56
LIME1-210ENST00000621325 ANAPC4Q9UJX5 808 aa24.78■■□□□ 1.56
LIME1-210ENST00000621325 BAZ2AQ9UIF9 1905 aaKnown RBP24.78■■□□□ 1.56
LIME1-210ENST00000621325 CDKL5O76039 1030 aa24.78■■□□□ 1.56
LIME1-210ENST00000621325 KIF23Q02241 960 aaPredicted RBP24.78■■□□□ 1.56
LIME1-210ENST00000621325 WTAPQ15007 396 aa24.78■■□□□ 1.56
LIME1-210ENST00000621325 GOLPH3LQ9H4A5 285 aa24.78■■□□□ 1.56
LIME1-210ENST00000621325 BRIP1Q9BX63 1249 aa24.77■■□□□ 1.56
LIME1-210ENST00000621325 CLIC4Q9Y696 253 aa24.77■■□□□ 1.56
LIME1-210ENST00000621325 MYH13Q9UKX3 1938 aa24.77■■□□□ 1.56
LIME1-210ENST00000621325 SERPINB2P05120 415 aa24.77■■□□□ 1.56
LIME1-210ENST00000621325 IARSP41252 1262 aaKnown RBP24.77■■□□□ 1.56
LIME1-210ENST00000621325 CPLX2Q6PUV4 134 aaKnown RBP24.77■■□□□ 1.56
LIME1-210ENST00000621325 CCAR1Q8IX12 1150 aaKnown RBP24.77■■□□□ 1.56
LIME1-210ENST00000621325 PRDM1O75626 825 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 SART3Q15020 963 aaKnown RBP24.76■■□□□ 1.55
LIME1-210ENST00000621325 CTR9Q6PD62 1173 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 USP25Q9UHP3 1055 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 CCDC192P0DO97 292 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 ME1P48163 572 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 SLC27A3Q5K4L6 730 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 MYSM1Q5VVJ2 828 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 KRT40Q6A162 431 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 RTEL1Q9NZ71 1219 aa24.76■■□□□ 1.55
LIME1-210ENST00000621325 USP17L12C9JPN9 530 aa24.75■■□□□ 1.55
LIME1-210ENST00000621325 USP17L21D6R901 530 aa24.75■■□□□ 1.55
LIME1-210ENST00000621325 PROM2Q8N271 834 aa24.75■■□□□ 1.55
LIME1-210ENST00000621325 RPGRQ92834 1020 aaKnown RBP24.75■■□□□ 1.55
LIME1-210ENST00000621325 SLC26A6Q9BXS9 759 aa24.75■■□□□ 1.55
LIME1-210ENST00000621325 BRWD3Q6RI45 1802 aa24.75■■□□□ 1.55
LIME1-210ENST00000621325 UVSSAQ2YD98 709 aa24.75■■□□□ 1.55
LIME1-210ENST00000621325 SYNE3Q6ZMZ3 975 aa24.75■■□□□ 1.55
LIME1-210ENST00000621325 CMTR1Q8N1G2 835 aaKnown RBP24.75■■□□□ 1.55
LIME1-210ENST00000621325 UBAC1Q9BSL1 405 aa24.75■■□□□ 1.55
LIME1-210ENST00000621325 ERICH2A1L162 156 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 TYRO3Q06418 890 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 DDR1Q08345 913 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 RBM43Q6ZSC3 357 aaKnown RBP24.74■■□□□ 1.55
LIME1-210ENST00000621325 PCDHA7Q9UN72 937 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 MRVI1Q9Y6F6 885 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 XDHP47989 1333 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 GPSM2P81274 684 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 CRY2Q49AN0 593 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 BRAPQ7Z569 592 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 CCDC82Q8N4S0 544 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 LINC00301Q8NCQ3 95 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 ESR2Q92731 530 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 LEMD3Q9Y2U8 911 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 TNKSO95271 1327 aa24.74■■□□□ 1.55
LIME1-210ENST00000621325 GUCY1A2P33402 732 aa24.73■■□□□ 1.55
LIME1-210ENST00000621325 SEC23AQ15436 765 aa24.73■■□□□ 1.55
LIME1-210ENST00000621325 GRIK5Q16478 980 aa24.73■■□□□ 1.55
LIME1-210ENST00000621325 RTN1Q16799 776 aa24.73■■□□□ 1.55
LIME1-210ENST00000621325 KLHL34Q8N239 644 aa24.73■■□□□ 1.55
LIME1-210ENST00000621325 NUP133Q8WUM0 1156 aa24.73■■□□□ 1.55
LIME1-210ENST00000621325 DCP1AQ9NPI6 582 aaPredicted RBP24.73■■□□□ 1.55
LIME1-210ENST00000621325 SNW1Q13573 536 aaKnown RBP24.72■■□□□ 1.55
LIME1-210ENST00000621325 ZNF654Q8IZM8 581 aa24.72■■□□□ 1.55
LIME1-210ENST00000621325 CYP2D6P10635 497 aa24.72■■□□□ 1.55
LIME1-210ENST00000621325 IFNAR1P17181 557 aa24.72■■□□□ 1.55
LIME1-210ENST00000621325 ST5P78524 1137 aa24.72■■□□□ 1.55
LIME1-210ENST00000621325 SSRP1Q08945 709 aaKnown RBP24.72■■□□□ 1.55
LIME1-210ENST00000621325 DZIP1Q86YF9 867 aaKnown RBP24.72■■□□□ 1.55
LIME1-210ENST00000621325 ECM29Q5VYK3 1845 aa24.71■■□□□ 1.55
LIME1-210ENST00000621325 NID2Q14112 1375 aa24.71■■□□□ 1.55
LIME1-210ENST00000621325 FMNL1O95466 1100 aaPredicted RBP24.71■■□□□ 1.55
LIME1-210ENST00000621325 STK38Q15208 465 aa24.71■■□□□ 1.55
LIME1-210ENST00000621325 TXNRD1Q16881 649 aa24.71■■□□□ 1.55
LIME1-210ENST00000621325 ENAHQ8N8S7 591 aaPredicted RBP24.71■■□□□ 1.55
LIME1-210ENST00000621325 TDRD7Q8NHU6 1098 aaKnown RBP24.71■■□□□ 1.55
LIME1-210ENST00000621325 MTA3Q9BTC8 594 aa24.71■■□□□ 1.55
LIME1-210ENST00000621325 CRNKL1Q9BZJ0 848 aaKnown RBP24.71■■□□□ 1.55
LIME1-210ENST00000621325 POLR3EQ9NVU0 708 aa24.71■■□□□ 1.55
LIME1-210ENST00000621325 MYH2Q9UKX2 1941 aa24.71■■□□□ 1.55
LIME1-210ENST00000621325 FSIP1Q8NA03 581 aa24.71■■□□□ 1.55
LIME1-210ENST00000621325 DUOX1Q9NRD9 1551 aa24.7■■□□□ 1.55
LIME1-210ENST00000621325 SLC4A8Q2Y0W8 1093 aa24.7■■□□□ 1.54
LIME1-210ENST00000621325 TMTC2Q8N394 836 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms