RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 WNK4Q96J92 1243 aa19.66■□□□□ 0.74
TRIM28-213ENST00000598355 PRDM10Q9NQV6 1147 aa19.66■□□□□ 0.74
TRIM28-213ENST00000598355 SAGE1Q9NXZ1 904 aa19.66■□□□□ 0.74
TRIM28-213ENST00000598355 ZNF112Q9UJU3 913 aa19.66■□□□□ 0.74
TRIM28-213ENST00000598355 CASP8AP2Q9UKL3 1982 aa19.65■□□□□ 0.74
TRIM28-213ENST00000598355 IDH1O75874 414 aaKnown RBP19.65■□□□□ 0.74
TRIM28-213ENST00000598355 GJA5P36382 358 aa19.65■□□□□ 0.74
TRIM28-213ENST00000598355 HAUS7Q99871 368 aa19.65■□□□□ 0.74
TRIM28-213ENST00000598355 DDTLA6NHG4 134 aaPredicted RBP19.64■□□□□ 0.73
TRIM28-213ENST00000598355 PLCG2P16885 1265 aa19.64■□□□□ 0.73
TRIM28-213ENST00000598355 TM4SF4P48230 202 aa19.64■□□□□ 0.73
TRIM28-213ENST00000598355 MAP3K9P80192 1104 aa19.64■□□□□ 0.73
TRIM28-213ENST00000598355 MAP3K12Q12852 859 aa19.64■□□□□ 0.73
TRIM28-213ENST00000598355 CERS3Q8IU89 383 aa19.64■□□□□ 0.73
TRIM28-213ENST00000598355 SH3RF3Q8TEJ3 882 aaPredicted RBP19.64■□□□□ 0.73
TRIM28-213ENST00000598355 SLC10A4Q96EP9 437 aa19.64■□□□□ 0.73
TRIM28-213ENST00000598355 ZNF341Q9BYN7 854 aa19.64■□□□□ 0.73
TRIM28-213ENST00000598355 AATFQ9NY61 560 aaKnown RBP eCLIP19.64■□□□□ 0.73
TRIM28-213ENST00000598355 SNCAIPQ9Y6H5 919 aa19.64■□□□□ 0.73
TRIM28-213ENST00000598355 SALL3Q9BXA9 1300 aa19.63■□□□□ 0.73
TRIM28-213ENST00000598355 BAG3O95817 575 aa19.63■□□□□ 0.73
TRIM28-213ENST00000598355 WRNIP1Q96S55 665 aa19.63■□□□□ 0.73
TRIM28-213ENST00000598355 BEGAINQ9BUH8 593 aa19.63■□□□□ 0.73
TRIM28-213ENST00000598355 OSBPL5Q9H0X9 879 aaPredicted RBP19.63■□□□□ 0.73
TRIM28-213ENST00000598355 SUPT16HQ9Y5B9 1047 aaKnown RBP19.63■□□□□ 0.73
TRIM28-213ENST00000598355 SPDYE5A6NIY4 337 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 GOLIM4O00461 696 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 CYP7A1P22680 504 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 NOL9Q5SY16 702 aaKnown RBP19.62■□□□□ 0.73
TRIM28-213ENST00000598355 TEX11Q8IYF3 940 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 MAGEB6Q8N7X4 407 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 EXOC6Q8TAG9 804 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 EDC3Q96F86 508 aaKnown RBP19.62■□□□□ 0.73
TRIM28-213ENST00000598355 BOLA2Q9H3K6 86 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 ECHDC1Q9NTX5 307 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 PAG1Q9NWQ8 432 aa19.62■□□□□ 0.73
TRIM28-213ENST00000598355 FLT1P17948 1338 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 TCRBV5S4A2TA0A5A2 114 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 MANSC4A6NHS7 340 aaPredicted RBP19.61■□□□□ 0.73
TRIM28-213ENST00000598355 PDE6AP16499 860 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 LBX1P52954 281 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 SREBF2Q12772 1141 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 PICALMQ13492 652 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 GCC1Q96CN9 775 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 OPTNQ96CV9 577 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 DNAJC2Q99543 621 aaKnown RBP19.61■□□□□ 0.73
TRIM28-213ENST00000598355 RIOK1Q9BRS2 568 aaKnown RBP19.61■□□□□ 0.73
TRIM28-213ENST00000598355 NOL10Q9BSC4 688 aaKnown RBP19.61■□□□□ 0.73
TRIM28-213ENST00000598355 CFHR5Q9BXR6 569 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 ELP3Q9H9T3 547 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 RNF186Q9NXI6 227 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 CSADQ9Y600 493 aa19.61■□□□□ 0.73
TRIM28-213ENST00000598355 TESPA1A2RU30 521 aaPredicted RBP19.6■□□□□ 0.73
TRIM28-213ENST00000598355 PHF20L1A8MW92 1017 aa19.6■□□□□ 0.73
TRIM28-213ENST00000598355 TBC1D12O60347 775 aa19.6■□□□□ 0.73
TRIM28-213ENST00000598355 INPP5BP32019 993 aa19.6■□□□□ 0.73
TRIM28-213ENST00000598355 COL13A1Q5TAT6 717 aaPredicted RBP19.6■□□□□ 0.73
TRIM28-213ENST00000598355 MIGA2Q7L4E1 593 aa19.6■□□□□ 0.73
TRIM28-213ENST00000598355 BAZ2AQ9UIF9 1905 aaKnown RBP19.59■□□□□ 0.73
TRIM28-213ENST00000598355 TTC41PQ6P2S7 1318 aa19.59■□□□□ 0.73
TRIM28-213ENST00000598355 DYNLL1P63167 89 aaKnown RBP19.59■□□□□ 0.73
TRIM28-213ENST00000598355 MKRN3Q13064 507 aaKnown RBP19.59■□□□□ 0.73
TRIM28-213ENST00000598355 SMC5Q8IY18 1101 aa19.59■□□□□ 0.73
TRIM28-213ENST00000598355 CNKSR2Q8WXI2 1034 aa19.59■□□□□ 0.73
TRIM28-213ENST00000598355 MS4A4AQ96JQ5 239 aa19.59■□□□□ 0.73
TRIM28-213ENST00000598355 ADD2P35612 726 aa19.58■□□□□ 0.72
TRIM28-213ENST00000598355 INHBEP58166 350 aa19.58■□□□□ 0.72
TRIM28-213ENST00000598355 SLC9C2Q5TAH2 1124 aa19.58■□□□□ 0.72
TRIM28-213ENST00000598355 METTL16Q86W50 562 aaKnown RBP19.58■□□□□ 0.72
TRIM28-213ENST00000598355 ERO1BQ86YB8 467 aa19.58■□□□□ 0.72
TRIM28-213ENST00000598355 PI4K2BQ8TCG2 481 aa19.58■□□□□ 0.72
TRIM28-213ENST00000598355 ZKSCAN4Q969J2 545 aaPredicted RBP19.58■□□□□ 0.72
TRIM28-213ENST00000598355 GPATCH3Q96I76 525 aa19.58■□□□□ 0.72
TRIM28-213ENST00000598355 ZNF532Q9HCE3 1301 aa19.57■□□□□ 0.72
TRIM28-213ENST00000598355 ZSCAN29Q8IWY8 852 aaPredicted RBP19.57■□□□□ 0.72
TRIM28-213ENST00000598355 MIGA1Q8NAN2 632 aa19.57■□□□□ 0.72
TRIM28-213ENST00000598355 TGFBRAP1Q8WUH2 860 aa19.57■□□□□ 0.72
TRIM28-213ENST00000598355 DHX36Q9H2U1 1008 aaKnown RBP19.57■□□□□ 0.72
TRIM28-213ENST00000598355 TSKSQ9UJT2 592 aa19.57■□□□□ 0.72
TRIM28-213ENST00000598355 LOC285556D6RIA3 1793 aa19.57■□□□□ 0.72
TRIM28-213ENST00000598355 MYH8P13535 1937 aa19.57■□□□□ 0.72
TRIM28-213ENST00000598355 SLURP2P0DP57 97 aa19.56■□□□□ 0.72
TRIM28-213ENST00000598355 PPIL2Q13356 520 aa19.56■□□□□ 0.72
TRIM28-213ENST00000598355 NOM1Q5C9Z4 860 aaKnown RBP19.56■□□□□ 0.72
TRIM28-213ENST00000598355 TSHZ3Q63HK5 1081 aa19.56■□□□□ 0.72
TRIM28-213ENST00000598355 OTUD7AQ8TE49 926 aaPredicted RBP19.56■□□□□ 0.72
TRIM28-213ENST00000598355 BCL11AQ9H165 835 aa19.56■□□□□ 0.72
TRIM28-213ENST00000598355 IGF2BP3O00425 579 aaKnown RBP eCLIP19.55■□□□□ 0.72
TRIM28-213ENST00000598355 TRPA1O75762 1119 aa19.55■□□□□ 0.72
TRIM28-213ENST00000598355 PPATQ06203 517 aa19.55■□□□□ 0.72
TRIM28-213ENST00000598355 UBE3CQ15386 1083 aa19.55■□□□□ 0.72
TRIM28-213ENST00000598355 IFNL1Q8IU54 200 aa19.55■□□□□ 0.72
TRIM28-213ENST00000598355 MAPKAPK5Q8IW41 473 aa19.55■□□□□ 0.72
TRIM28-213ENST00000598355 OTUD5Q96G74 571 aa19.55■□□□□ 0.72
TRIM28-213ENST00000598355 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.55■□□□□ 0.722e-8■■□□□ 12.6
TRIM28-213ENST00000598355 DNAJC18Q9H819 358 aa19.55■□□□□ 0.72
TRIM28-213ENST00000598355 HERC5Q9UII4 1024 aaKnown RBP19.55■□□□□ 0.72
TRIM28-213ENST00000598355 KCNH4Q9UQ05 1017 aa19.55■□□□□ 0.72
TRIM28-213ENST00000598355 IRF6O14896 467 aa19.54■□□□□ 0.72
TRIM28-213ENST00000598355 MX1P20591 662 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 170.2 ms