RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 GIMAP7Q8NHV1 300 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 GOLGA5Q8TBA6 731 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 HAUS7Q99871 368 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 IRX2Q9BZI1 471 aaPredicted RBP12.94□□□□□ -0.34
CLN3-238ENST00000569430 MACROD2A1Z1Q3 448 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 CUTAO60888 179 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 NLRP5P59047 1200 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 CCDC96Q2M329 555 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 CC2D1AQ6P1N0 951 aaPredicted RBP12.94□□□□□ -0.34
CLN3-238ENST00000569430 MLKLQ8NB16 471 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 LRRN4CLQ8ND94 238 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 DPF2Q92785 391 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 PSMB7Q99436 277 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 PLIN2Q99541 437 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 DSCC1Q9BVC3 393 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 ZMYND10O75800 440 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 CYP2C19P33261 490 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 ACTN2P35609 894 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 ST3GAL1Q11201 340 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 MAP3K12Q12852 859 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 HLTFQ14527 1009 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLN3-238ENST00000569430 SLC4A8Q2Y0W8 1093 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 EPHA10Q5JZY3 1008 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 BTBD18B2RXH4 712 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 SSBP05455 408 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLN3-238ENST00000569430 TDRD12Q587J7 1177 aaKnown RBP12.93□□□□□ -0.34
CLN3-238ENST00000569430 IFNL2Q8IZJ0 200 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 WDR24Q96S15 920 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 TAB2Q9NYJ8 693 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 NEURL4Q96JN8 1562 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 VWA3AA6NCI4 1184 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 EYA2O00167 538 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 AKR1B10O60218 316 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 STX10O60499 249 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 COL9A3Q14050 684 aaPredicted RBP12.93□□□□□ -0.34
CLN3-238ENST00000569430 ATRIPQ8WXE1 791 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 ZHX3Q9H4I2 956 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 RICTORQ6R327 1708 aa12.93□□□□□ -0.34
CLN3-238ENST00000569430 SOWAHDA6NJG2 315 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 USO1O60763 962 aaKnown RBP12.92□□□□□ -0.34
CLN3-238ENST00000569430 SLC39A14Q15043 492 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 ZNF174Q15697 407 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 FAM76AQ8TAV0 307 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 EEF2KMTQ96G04 330 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 CDK5RAP3Q96JB5 506 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 SAMSN1Q9NSI8 373 aaKnown RBP12.92□□□□□ -0.34
CLN3-238ENST00000569430 CTNND2Q9UQB3 1225 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 LUC7L2Q9Y383 392 aaKnown RBP12.92□□□□□ -0.34
CLN3-238ENST00000569430 GCP02774 474 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 ZAP70P43403 619 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 PROSER2Q86WR7 435 aaPredicted RBP12.92□□□□□ -0.34
CLN3-238ENST00000569430 KLHL34Q8N239 644 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 KDRP35968 1356 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 LRRC24Q50LG9 513 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 TOGARAM2Q6ZUX3 1019 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 MAATS1Q7Z4T9 603 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 SRGAP1Q7Z6B7 1085 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 VSTM4Q8IW00 320 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 SLC35F6Q8N357 371 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 POLR3EQ9NVU0 708 aa12.92□□□□□ -0.34
CLN3-238ENST00000569430 ENC1O14682 589 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 E2F4Q16254 413 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 CACNA2D4Q7Z3S7 1137 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 ORAI2Q96SN7 254 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 CRB1P82279 1406 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 IKBKBO14920 756 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 MYO1BO43795 1136 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 UBA7P41226 1012 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 LIG3P49916 1009 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 SMYD4Q8IYR2 804 aaPredicted RBP12.91□□□□□ -0.34
CLN3-238ENST00000569430 FAM89AQ96GI7 184 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 CDC5LQ99459 802 aaKnown RBP12.91□□□□□ -0.34
CLN3-238ENST00000569430 FAM204AQ9H8W3 233 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 TMEM51Q9NW97 253 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 CDC23Q9UJX2 597 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 SYNRGQ9UMZ2 1314 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 CCDC151A5D8V7 595 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 KRT86O43790 486 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 TADA3O75528 432 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 STOX1Q6ZVD7 989 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 PPM1EQ8WY54 764 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 XAGE2Q96GT9 111 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.91□□□□□ -0.34
CLN3-238ENST00000569430 TRMT112Q9UI30 125 aaKnown RBP12.91□□□□□ -0.34
CLN3-238ENST00000569430 REREQ9P2R6 1566 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 TCHHQ07283 1943 aa12.91□□□□□ -0.34
CLN3-238ENST00000569430 KIF23Q02241 960 aaPredicted RBP12.9□□□□□ -0.34
CLN3-238ENST00000569430 CKAP4Q07065 602 aaKnown RBP12.9□□□□□ -0.34
CLN3-238ENST00000569430 OTUD6BQ8N6M0 293 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 MIGA1Q8NAN2 632 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 CTCFLQ8NI51 663 aaPredicted RBP12.9□□□□□ -0.34
CLN3-238ENST00000569430 APPBP2Q92624 585 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 BLZF1Q9H2G9 400 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 ABCB6Q9NP58 842 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 COPRSQ9NQ92 184 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 TTF2Q9UNY4 1162 aaKnown RBP12.9□□□□□ -0.34
CLN3-238ENST00000569430 GOLGA6CA6NDK9 693 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 GOLGA6DP0CG33 693 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 CYLC1P35663 651 aaPredicted RBP12.9□□□□□ -0.34
CLN3-238ENST00000569430 PLA2G4AP47712 749 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms