RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 IRX6P78412 446 aaPredicted RBP15.74■□□□□ 0.11
CLK3-224ENST00000568605 ZSCAN25Q6NSZ9 544 aa15.74■□□□□ 0.11
CLK3-224ENST00000568605 MOB2Q70IA6 237 aa15.74■□□□□ 0.11
CLK3-224ENST00000568605 RASAL3Q86YV0 1011 aa15.74■□□□□ 0.11
CLK3-224ENST00000568605 CSRNP1Q96S65 589 aa15.74■□□□□ 0.11
CLK3-224ENST00000568605 FAM198AQ9UFP1 575 aa15.74■□□□□ 0.11
CLK3-224ENST00000568605 CSADQ9Y600 493 aa15.74■□□□□ 0.11
CLK3-224ENST00000568605 GLRX3O76003 335 aaKnown RBP15.73■□□□□ 0.11
CLK3-224ENST00000568605 PPP4CP60510 307 aa15.73■□□□□ 0.11
CLK3-224ENST00000568605 LRRFIP1Q32MZ4 808 aaKnown RBP15.73■□□□□ 0.11
CLK3-224ENST00000568605 SLC9C2Q5TAH2 1124 aa15.73■□□□□ 0.11
CLK3-224ENST00000568605 CDAN1Q8IWY9 1227 aa15.73■□□□□ 0.11
CLK3-224ENST00000568605 SMC5Q8IY18 1101 aa15.73■□□□□ 0.11
CLK3-224ENST00000568605 REM2Q8IYK8 340 aaPredicted RBP15.73■□□□□ 0.11
CLK3-224ENST00000568605 ZNF341Q9BYN7 854 aa15.73■□□□□ 0.11
CLK3-224ENST00000568605 PDE6AP16499 860 aa15.72■□□□□ 0.11
CLK3-224ENST00000568605 LDLRAD1Q5T700 205 aa15.72■□□□□ 0.11
CLK3-224ENST00000568605 ADGRA1Q86SQ6 560 aa15.72■□□□□ 0.11
CLK3-224ENST00000568605 SH3RF3Q8TEJ3 882 aaPredicted RBP15.72■□□□□ 0.11
CLK3-224ENST00000568605 FAM155AB1AL88 458 aaPredicted RBP15.71■□□□□ 0.11
CLK3-224ENST00000568605 AOC2O75106 756 aa15.71■□□□□ 0.11
CLK3-224ENST00000568605 USP2O75604 605 aaPredicted RBP15.71■□□□□ 0.11
CLK3-224ENST00000568605 HSPA1AP0DMV8 641 aaKnown RBP15.71■□□□□ 0.11
CLK3-224ENST00000568605 HSPA1BP0DMV9 641 aaKnown RBP15.71■□□□□ 0.11
CLK3-224ENST00000568605 ZBTB48P10074 688 aaPredicted RBP15.71■□□□□ 0.11
CLK3-224ENST00000568605 MIGA1Q8NAN2 632 aa15.71■□□□□ 0.11
CLK3-224ENST00000568605 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLK3-224ENST00000568605 SLC10A4Q96EP9 437 aa15.71■□□□□ 0.11
CLK3-224ENST00000568605 WRNIP1Q96S55 665 aa15.71■□□□□ 0.11
CLK3-224ENST00000568605 OSBPL5Q9H0X9 879 aaPredicted RBP15.71■□□□□ 0.11
CLK3-224ENST00000568605 FZD1Q9UP38 647 aa15.71■□□□□ 0.11
CLK3-224ENST00000568605 FLT1P17948 1338 aa15.7■□□□□ 0.1
CLK3-224ENST00000568605 ZNF532Q9HCE3 1301 aa15.7■□□□□ 0.1
CLK3-224ENST00000568605 MAGEB6P1A0A0J9YX57 407 aa15.7■□□□□ 0.1
CLK3-224ENST00000568605 CA12O43570 354 aa15.7■□□□□ 0.1
CLK3-224ENST00000568605 USP5P45974 858 aa15.7■□□□□ 0.1
CLK3-224ENST00000568605 EDC3Q96F86 508 aaKnown RBP15.7■□□□□ 0.1
CLK3-224ENST00000568605 LNPKQ9C0E8 428 aa15.7■□□□□ 0.1
CLK3-224ENST00000568605 DHX36Q9H2U1 1008 aaKnown RBP15.7■□□□□ 0.1
CLK3-224ENST00000568605 DDX4Q9NQI0 724 aaKnown RBP15.7■□□□□ 0.1
CLK3-224ENST00000568605 PCNTO95613 3336 aa15.7■□□□□ 0.1
CLK3-224ENST00000568605 SALL3Q9BXA9 1300 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 CENPBP07199 599 aaPredicted RBP15.69■□□□□ 0.1
CLK3-224ENST00000568605 ADD2P35612 726 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 MAP3K9P80192 1104 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 SREBF2Q12772 1141 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 TSHZ3Q63HK5 1081 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 B4GALNT3Q6L9W6 998 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 KBTBD3Q8NAB2 608 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 TGFBRAP1Q8WUH2 860 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 WNK4Q96J92 1243 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 CRNKL1Q9BZJ0 848 aaKnown RBP15.69■□□□□ 0.1
CLK3-224ENST00000568605 LOC285556D6RIA3 1793 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 CASP8AP2Q9UKL3 1982 aa15.69■□□□□ 0.1
CLK3-224ENST00000568605 HLA-DOAP06340 250 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 ZFYP08048 801 aaPredicted RBP15.68■□□□□ 0.1
CLK3-224ENST00000568605 DYNLL1P63167 89 aaKnown RBP15.68■□□□□ 0.1
CLK3-224ENST00000568605 KIF23Q02241 960 aaPredicted RBP15.68■□□□□ 0.1
CLK3-224ENST00000568605 VGLL4Q14135 290 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 UBE3CQ15386 1083 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 MIGA2Q7L4E1 593 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 CHD1LQ86WJ1 897 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 MAPKAPK5Q8IW41 473 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 PI4K2BQ8TCG2 481 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 CLMNQ96JQ2 1002 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 TRIM34Q9BYJ4 488 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 ELP3Q9H9T3 547 aa15.68■□□□□ 0.1
CLK3-224ENST00000568605 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.68■□□□□ 0.1
CLK3-224ENST00000568605 LAMA4Q16363 1823 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 TCRBV5S4A2TA0A5A2 114 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 DDTLA6NHG4 134 aaPredicted RBP15.67■□□□□ 0.1
CLK3-224ENST00000568605 IGHDP01880 384 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 NEFLP07196 543 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 PDE1AP54750 535 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 NUCB1Q02818 461 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 SPRYD7Q5W111 196 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.67■□□□□ 0.1
CLK3-224ENST00000568605 ZFPM1Q8IX07 1006 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 OTUD7AQ8TE49 926 aaPredicted RBP15.67■□□□□ 0.1
CLK3-224ENST00000568605 DDRGK1Q96HY6 314 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 RIOK1Q9BRS2 568 aaKnown RBP15.67■□□□□ 0.1
CLK3-224ENST00000568605 FSD1Q9BTV5 496 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 WBP1LQ9NX94 342 aa15.67■□□□□ 0.1
CLK3-224ENST00000568605 HERC5Q9UII4 1024 aaKnown RBP15.67■□□□□ 0.1
CLK3-224ENST00000568605 MANSC4A6NHS7 340 aaPredicted RBP15.66■□□□□ 0.1
CLK3-224ENST00000568605 CRACR2BQ8N4Y2 399 aaPredicted RBP15.66■□□□□ 0.1
CLK3-224ENST00000568605 OPTNQ96CV9 577 aa15.66■□□□□ 0.1
CLK3-224ENST00000568605 PI4KBQ9UBF8 816 aa15.66■□□□□ 0.1
CLK3-224ENST00000568605 STAP2Q9UGK3 403 aa15.66■□□□□ 0.1
CLK3-224ENST00000568605 SPDYE5A6NIY4 337 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 TBC1D12O60347 775 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 MBD4O95243 580 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 CTCFP49711 727 aaPredicted RBP15.65■□□□□ 0.1
CLK3-224ENST00000568605 MKRN3Q13064 507 aaKnown RBP15.65■□□□□ 0.1
CLK3-224ENST00000568605 NOL9Q5SY16 702 aaKnown RBP15.65■□□□□ 0.1
CLK3-224ENST00000568605 SH3BP5LQ7L8J4 393 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 ERO1BQ86YB8 467 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 AMOTL1Q8IY63 956 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.65■□□□□ 0.1
CLK3-224ENST00000568605 PICK1Q9NRD5 415 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 169.3 ms