RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 HAUS7Q99871 368 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 PUS3Q9BZE2 481 aaKnown RBP15.28■□□□□ 0.04
CLK3-206ENST00000562078 ZKSCAN1P17029 563 aaPredicted RBP15.27■□□□□ 0.04
CLK3-206ENST00000562078 EIF5P55010 431 aaKnown RBP15.27■□□□□ 0.04
CLK3-206ENST00000562078 TIMM10P62072 90 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 HLFQ16534 295 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 ME3Q16798 604 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 GIGYF2Q6Y7W6 1299 aaKnown RBP15.27■□□□□ 0.04
CLK3-206ENST00000562078 FAM196AQ6ZSG2 479 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 TADA2BQ86TJ2 420 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 MICALL1Q8N3F8 863 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 KCNB2Q92953 911 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 CCNL1Q9UK58 526 aaPredicted RBP15.27■□□□□ 0.04
CLK3-206ENST00000562078 AKAP2Q9Y2D5 859 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 SPEF2Q9C093 1822 aa15.27■□□□□ 0.04
CLK3-206ENST00000562078 PCCAP05165 728 aaPredicted RBP15.27■□□□□ 0.03
CLK3-206ENST00000562078 SFPQP23246 707 aaKnown RBP eCLIP15.27■□□□□ 0.03
CLK3-206ENST00000562078 TRIM28Q13263 835 aaKnown RBP15.27■□□□□ 0.03
CLK3-206ENST00000562078 STX1AQ16623 288 aa15.27■□□□□ 0.03
CLK3-206ENST00000562078 HSP90AB3PQ58FF7 597 aa15.27■□□□□ 0.03
CLK3-206ENST00000562078 TMC6Q7Z403 805 aa15.27■□□□□ 0.03
CLK3-206ENST00000562078 FAM177A1Q8N128 213 aaPredicted RBP15.27■□□□□ 0.03
CLK3-206ENST00000562078 AOPEPQ8N6M6 819 aa15.27■□□□□ 0.03
CLK3-206ENST00000562078 FAN1Q9Y2M0 1017 aa15.27■□□□□ 0.03
CLK3-206ENST00000562078 RFX7Q2KHR2 1363 aa15.27■□□□□ 0.03
CLK3-206ENST00000562078 MAP2K7O14733 419 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 SLC27A2O14975 620 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 APOBRQ0VD83 1088 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 COL9A3Q14050 684 aaPredicted RBP15.26■□□□□ 0.03
CLK3-206ENST00000562078 CCDC57Q2TAC2 916 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 EFCAB13Q8IY85 973 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 KAT2BQ92831 832 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 CYP46A1Q9Y6A2 500 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 TAF1LQ8IZX4 1826 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 SKIDA1Q1XH10 827 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 SYNE4Q8N205 404 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 ERCC4Q92889 916 aaPredicted RBP15.26■□□□□ 0.03
CLK3-206ENST00000562078 TM6SF1Q9BZW5 370 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 ZSWIM6Q9HCJ5 1215 aa15.26■□□□□ 0.03
CLK3-206ENST00000562078 CIAO1O76071 339 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 TUBB4AP04350 444 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 MNAT1P51948 309 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 ZBTB38Q8NAP3 1195 aaPredicted RBP15.25■□□□□ 0.03
CLK3-206ENST00000562078 GPR108Q9NPR9 543 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 MKRN1Q9UHC7 482 aaKnown RBP15.25■□□□□ 0.03
CLK3-206ENST00000562078 TAF6LQ9Y6J9 622 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 RXRBP28702 533 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 VPS53Q5VIR6 699 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 CCDC129Q6ZRS4 1044 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 CCDC150Q8NCX0 1101 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 IMPACTQ9P2X3 320 aa15.25■□□□□ 0.03
CLK3-206ENST00000562078 ERVV-1B6SEH8 477 aa15.24■□□□□ 0.03
CLK3-206ENST00000562078 GOLIM4O00461 696 aa15.24■□□□□ 0.03
CLK3-206ENST00000562078 TAF5LO75529 589 aa15.24■□□□□ 0.03
CLK3-206ENST00000562078 ZRSR1Q15695 479 aaKnown RBP15.24■□□□□ 0.03
CLK3-206ENST00000562078 RSRC2Q7L4I2 434 aaKnown RBP15.24■□□□□ 0.03
CLK3-206ENST00000562078 SEC62Q99442 399 aaKnown RBP15.24■□□□□ 0.03
CLK3-206ENST00000562078 XPO4Q9C0E2 1151 aaKnown RBP15.24■□□□□ 0.03
CLK3-206ENST00000562078 MYO5AQ9Y4I1 1855 aaKnown RBP15.24■□□□□ 0.03
CLK3-206ENST00000562078 TRIM37O94972 964 aa15.24■□□□□ 0.03
CLK3-206ENST00000562078 NLRP10Q86W26 655 aa15.24■□□□□ 0.03
CLK3-206ENST00000562078 KBTBD3Q8NAB2 608 aa15.24■□□□□ 0.03
CLK3-206ENST00000562078 PAG1Q9NWQ8 432 aa15.24■□□□□ 0.03
CLK3-206ENST00000562078 CNTNAP4Q9C0A0 1308 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 PHACTR2O75167 634 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 PPP2R3AQ06190 1150 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 TMED8Q6PL24 325 aaPredicted RBP15.23■□□□□ 0.03
CLK3-206ENST00000562078 CEP126Q9P2H0 1117 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 BCORQ6W2J9 1755 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 AKAP11Q9UKA4 1901 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 CCDC196A0A1B0GTZ2 297 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 WWC2Q6AWC2 1192 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 ISM2Q6H9L7 571 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 PLA2G12BQ9BX93 195 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 SH2B1Q9NRF2 756 aaPredicted RBP15.23■□□□□ 0.03
CLK3-206ENST00000562078 IFNKQ9P0W0 207 aa15.23■□□□□ 0.03
CLK3-206ENST00000562078 A0A087WUV0 522 aaPredicted RBP15.22■□□□□ 0.03
CLK3-206ENST00000562078 KCNJ6P48051 423 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 IFIT5Q13325 482 aaKnown RBP15.22■□□□□ 0.03
CLK3-206ENST00000562078 TCEANC2Q96MN5 208 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 SUGCTQ9HAC7 445 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 TPCN1Q9ULQ1 816 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 RIC1Q4ADV7 1423 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 CDHR2Q9BYE9 1310 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 PPP2R5AQ15172 486 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 CNNM3Q8NE01 707 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 RNF217Q8TC41 542 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 RABGGTAQ92696 567 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 ZSCAN31Q96LW9 406 aaPredicted RBP15.22■□□□□ 0.03
CLK3-206ENST00000562078 ZSWIM4Q9H7M6 989 aa15.22■□□□□ 0.03
CLK3-206ENST00000562078 CCDC151A5D8V7 595 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 GNPATO15228 680 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 CSF1RP07333 972 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 IFIT1P09914 478 aaKnown RBP15.21■□□□□ 0.03
CLK3-206ENST00000562078 SCP2P22307 547 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 PSMA5P28066 241 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 LIG3P49916 1009 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 CEBPZQ03701 1054 aaKnown RBP15.21■□□□□ 0.03
CLK3-206ENST00000562078 MCMDC2Q4G0Z9 681 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 KCNV1Q6PIU1 500 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms