RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 GSTP1P09211 210 aaKnown RBP7.9□□□□□ -1.14
SCFD1-208ENST00000553278 PTSQ03393 145 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 IKBKEQ14164 716 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 ODR4Q5SWX8 454 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 MRM1Q6IN84 353 aaKnown RBP7.9□□□□□ -1.14
SCFD1-208ENST00000553278 ADAMTSL4Q6UY14 1074 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 FAM35AQ86V20 835 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 CHAC2Q8WUX2 184 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 MFSD3Q96ES6 412 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 CCDC136Q96JN2 1154 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 SPATA9Q9BWV2 254 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 ANTXR1Q9H6X2 564 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 HTR3BO95264 441 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 FAM153BP0C7A2 387 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 CPB1P15086 417 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 SMCPP49901 116 aaPredicted RBP7.89□□□□□ -1.15
SCFD1-208ENST00000553278 VHLLQ6RSH7 139 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.89□□□□□ -1.15
SCFD1-208ENST00000553278 SYT9Q86SS6 491 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 PDZD3Q86UT5 571 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 LRRC47Q8N1G4 583 aaKnown RBP7.89□□□□□ -1.15
SCFD1-208ENST00000553278 ACSBG1Q96GR2 724 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 PSMD1Q99460 953 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 LACRTQ9GZZ8 138 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 EPN3Q9H201 632 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 PHAXQ9H814 394 aaKnown RBP7.89□□□□□ -1.15
SCFD1-208ENST00000553278 GMIPQ9P107 970 aa7.89□□□□□ -1.15
SCFD1-208ENST00000553278 CCDC163A0A0D9SF12 145 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 UPK3BL1B0FP48 263 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 UPK3BL2E5RIL1 263 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 HNRNPUQ00839 825 aaKnown RBP eCLIP7.88□□□□□ -1.15
SCFD1-208ENST00000553278 TM4SF20Q53R12 229 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 WIPI1Q5MNZ9 446 aaPredicted RBP7.88□□□□□ -1.15
SCFD1-208ENST00000553278 INTS3Q68E01 1043 aaKnown RBP7.88□□□□□ -1.15
SCFD1-208ENST00000553278 ELMSAN1Q6PJG2 1045 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 FMNL3Q8IVF7 1028 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 NIM1KQ8IY84 436 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 NINJ1Q92982 152 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 GTPBP3Q969Y2 492 aaKnown RBP7.88□□□□□ -1.15
SCFD1-208ENST00000553278 IER2Q9BTL4 223 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 PCDHA4Q9UN74 947 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 PDZRN3Q9UPQ7 1066 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 ATP8A1Q9Y2Q0 1164 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 SNCAIPQ9Y6H5 919 aa7.88□□□□□ -1.15
SCFD1-208ENST00000553278 PLEKHD1A6NEE1 506 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 SIN3BO75182 1162 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 CDC27P30260 824 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 C21orf62-AS1Q17RA5 79 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 FOXR1Q6PIV2 292 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 MPRIPQ6WCQ1 1025 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 UNC5AQ6ZN44 842 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 HDXQ7Z353 690 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 CACTIN-AS1Q8N1I8 211 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 ZBTB38Q8NAP3 1195 aaPredicted RBP7.87□□□□□ -1.15
SCFD1-208ENST00000553278 ZNF837Q96EG3 531 aaPredicted RBP7.87□□□□□ -1.15
SCFD1-208ENST00000553278 SMG9Q9H0W8 520 aaKnown RBP7.87□□□□□ -1.15
SCFD1-208ENST00000553278 SLC52A1Q9NWF4 448 aa7.87□□□□□ -1.15
SCFD1-208ENST00000553278 GFRA2O00451 464 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 MYCLP1P12525 358 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-208ENST00000553278 NME1P15531 152 aaKnown RBP7.86□□□□□ -1.15
SCFD1-208ENST00000553278 SOX5P35711 763 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 PDE4BQ07343 736 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 CT47A1Q5JQC4 288 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-208ENST00000553278 PERM1Q5SV97 790 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 ZNF468Q5VIY5 522 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-208ENST00000553278 OVOS1Q6IE37 1185 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 NLRC3Q7RTR2 1065 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 DHX37Q8IY37 1157 aaKnown RBP7.86□□□□□ -1.15
SCFD1-208ENST00000553278 CCDC155Q8N6L0 562 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 GPBAR1Q8TDU6 330 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 SOX17Q9H6I2 414 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-208ENST00000553278 CAAP1Q9H8G2 361 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 SH2B1Q9NRF2 756 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-208ENST00000553278 CACNA2D2Q9NY47 1150 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 REV1Q9UBZ9 1251 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 TCEAL9Q9UHQ7 104 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 SLC6A14Q9UN76 642 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 TRIM33Q9UPN9 1127 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 TACC3Q9Y6A5 838 aa7.86□□□□□ -1.15
SCFD1-208ENST00000553278 CCDC194A0A1B0GVG4 234 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 AGRPO00253 132 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 AXIN1O15169 862 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 SUSD5O60279 629 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 STAT3P40763 770 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 CDK8P49336 464 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 CTBSQ01459 385 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 EXOSC10Q01780 885 aaKnown RBP7.85□□□□□ -1.15
SCFD1-208ENST00000553278 GSTM4Q03013 218 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 SLC10A6Q3KNW5 377 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 THNSL2Q86YJ6 484 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 ATG4CQ96DT6 458 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 PLPPR2Q96GM1 343 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 MAGEC2Q9UBF1 373 aaPredicted RBP7.85□□□□□ -1.15
SCFD1-208ENST00000553278 MCM8Q9UJA3 840 aa7.85□□□□□ -1.15
SCFD1-208ENST00000553278 LTBP3Q9NS15 1303 aa7.84□□□□□ -1.15
SCFD1-208ENST00000553278 SLC22A31A6NKX4 558 aa7.84□□□□□ -1.15
SCFD1-208ENST00000553278 H3BRJ5 948 aa7.84□□□□□ -1.15
SCFD1-208ENST00000553278 SOX1O00570 391 aaPredicted RBP7.84□□□□□ -1.15
SCFD1-208ENST00000553278 ADCY3O60266 1144 aa7.84□□□□□ -1.15
SCFD1-208ENST00000553278 RFPL3O75679 317 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms