RNA–Protein interactions for RNA: ENST00000542557.5

PTPRO-208, Transcript of protein tyrosine phosphatase, receptor type O, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRO, Length 2,946 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRO-208ENST00000542557 CLIP2Q9UDT6 1046 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 A0A1B0GVL5 298 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 BECN2A8MW95 431 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 NEMFO60524 1076 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 FMNL1O95466 1100 aaPredicted RBP7.59□□□□□ -1.19
PTPRO-208ENST00000542557 IARSP41252 1262 aaKnown RBP7.59□□□□□ -1.19
PTPRO-208ENST00000542557 CHRNDQ07001 517 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 MAP7D2Q96T17 732 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 RNF41Q9H4P4 317 aaPredicted RBP7.59□□□□□ -1.19
PTPRO-208ENST00000542557 ARMT1Q9H993 441 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 FAM217BQ9NTX9 383 aaPredicted RBP7.59□□□□□ -1.19
PTPRO-208ENST00000542557 KIAA1468Q9P260 1216 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 SLC12A7Q9Y666 1083 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 COL4A1P02462 1669 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 COL24A1Q17RW2 1714 aa7.59□□□□□ -1.19
PTPRO-208ENST00000542557 CACNA1SQ13698 1873 aa7.59□□□□□ -1.2
PTPRO-208ENST00000542557 RANBP6O60518 1105 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 IFNAR1P17181 557 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 RBM6P78332 1123 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 TRIM29Q14134 588 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 SART3Q15020 963 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 NFXL1Q6ZNB6 911 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 MFSD6Q6ZSS7 791 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 DRC7Q8IY82 874 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 C17orf53Q8N3J3 647 aaPredicted RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 LCORLQ8N3X6 602 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 SDF4Q9BRK5 362 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 SENP2Q9HC62 589 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 GJB4Q9NTQ9 266 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 ZSWIM5Q9P217 1185 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 HPSEQ9Y251 543 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 CCDC69A6NI79 296 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 IFIT3O14879 490 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 PFKFB1P16118 471 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 TDO2P48775 406 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 BCAMP50895 628 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 UBE4AQ14139 1066 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 PTPAQ15257 358 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 SF3B3Q15393 1217 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 MTERF4Q7Z6M4 381 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 TMTC2Q8N394 836 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 ACSBG1Q96GR2 724 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 ANAPC4Q9UJX5 808 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 TACC3Q9Y6A5 838 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 SLC4A4Q9Y6R1 1079 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 MROH7-TTC4A0A0A0MT08 1334 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 COL1A1P02452 1464 aaPredicted RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 DUOX1Q9NRD9 1551 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 CTDSPL2Q05D32 466 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 SSRP1Q08945 709 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 PHKBQ93100 1093 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 MAP3K14Q99558 947 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 PDCL3Q9H2J4 239 aa7.58□□□□□ -1.2
PTPRO-208ENST00000542557 GNL3LQ9NVN8 582 aaKnown RBP7.58□□□□□ -1.2
PTPRO-208ENST00000542557 MAST2Q6P0Q8 1798 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 DLEC1Q9Y238 1755 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 CCDC196A0A1B0GTZ2 297 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 FAM177BA6PVY3 158 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 SNAP23O00161 211 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 ZNF202O95125 648 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 ADAMTS2O95450 1211 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 SLC3A2P08195 630 aaKnown RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 RXRAP19793 462 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 NLRP12P59046 1061 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 PPP2R5BQ15173 497 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 AIFM3Q96NN9 605 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 LRP2BPQ9P2M1 347 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 PDS5AQ29RF7 1337 aaKnown RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 CNTNAP4Q9C0A0 1308 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 WDHD1O75717 1129 aaPredicted RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 PPARAQ07869 468 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 CHAF1AQ13111 956 aaPredicted RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 GNL2Q13823 731 aaKnown RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 WTAPQ15007 396 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 ZRSR1Q15695 479 aaKnown RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 RTN1Q16799 776 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 CCDC144BQ3MJ40 725 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 RESP18Q5W5W9 173 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 ANKRD18AQ8IVF6 992 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 CCDC144CPQ8IYA2 1237 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 ELOA2Q8IYF1 753 aaPredicted RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 TRIM22Q8IYM9 498 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 AOPEPQ8N6M6 819 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 BSDC1Q9NW68 430 aaPredicted RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 NRBP1Q9UHY1 535 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 TUBE1Q9UJT0 475 aa7.57□□□□□ -1.2
PTPRO-208ENST00000542557 MORC2Q9Y6X9 1032 aaPredicted RBP7.57□□□□□ -1.2
PTPRO-208ENST00000542557 ERICH2A1L162 156 aa7.56□□□□□ -1.2
PTPRO-208ENST00000542557 SEMA3EO15041 775 aa7.56□□□□□ -1.2
PTPRO-208ENST00000542557 PRKAB2O43741 272 aa7.56□□□□□ -1.2
PTPRO-208ENST00000542557 CUTAO60888 179 aa7.56□□□□□ -1.2
PTPRO-208ENST00000542557 DEXIO95424 95 aa7.56□□□□□ -1.2
PTPRO-208ENST00000542557 MMP1P03956 469 aa7.56□□□□□ -1.2
PTPRO-208ENST00000542557 PCP11498 1178 aaKnown RBP7.56□□□□□ -1.2
PTPRO-208ENST00000542557 SYKP43405 635 aa7.56□□□□□ -1.2
PTPRO-208ENST00000542557 LRMPQ12912 555 aa7.56□□□□□ -1.2
PTPRO-208ENST00000542557 DHX8Q14562 1220 aaKnown RBP7.56□□□□□ -1.2
PTPRO-208ENST00000542557 DPCR1Q3MIW9 517 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms