RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PDE3AQ14432 1141 aa6.41□□□□□ -1.38
USP48-215ENST00000534705 FAM181AQ8N9Y4 354 aa6.41□□□□□ -1.38
USP48-215ENST00000534705 ATXN3LQ9H3M9 355 aa6.41□□□□□ -1.38
USP48-215ENST00000534705 PIDD1Q9HB75 910 aa6.41□□□□□ -1.38
USP48-215ENST00000534705 ZFYVE28Q9HCC9 887 aa6.41□□□□□ -1.38
USP48-215ENST00000534705 BIN2Q9UBW5 565 aaPredicted RBP6.41□□□□□ -1.38
USP48-215ENST00000534705 RAPGEFL1Q9UHV5 662 aa6.41□□□□□ -1.38
USP48-215ENST00000534705 FOXD3Q9UJU5 478 aaPredicted RBP6.41□□□□□ -1.38
USP48-215ENST00000534705 LRRC56Q8IYG6 542 aaPredicted RBP6.4□□□□□ -1.38
USP48-215ENST00000534705 TRIM56Q9BRZ2 755 aaKnown RBP6.4□□□□□ -1.38
USP48-215ENST00000534705 WDR18Q9BV38 432 aa6.4□□□□□ -1.38
USP48-215ENST00000534705 DNAJC25Q9H1X3 360 aa6.4□□□□□ -1.38
USP48-215ENST00000534705 LIN7BQ9HAP6 207 aa6.4□□□□□ -1.38
USP48-215ENST00000534705 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.4□□□□□ -1.38
USP48-215ENST00000534705 SNX11Q9Y5W9 270 aa6.4□□□□□ -1.38
USP48-215ENST00000534705 GPR182O15218 404 aa6.39□□□□□ -1.39
USP48-215ENST00000534705 B3GALT4O96024 378 aa6.39□□□□□ -1.39
USP48-215ENST00000534705 CEACAM5P06731 702 aa6.39□□□□□ -1.39
USP48-215ENST00000534705 SLFN14P0C7P3 912 aa6.39□□□□□ -1.39
USP48-215ENST00000534705 CD96P40200 585 aa6.39□□□□□ -1.39
USP48-215ENST00000534705 CDK5R2Q13319 367 aa6.39□□□□□ -1.39
USP48-215ENST00000534705 AP3B2Q13367 1082 aa6.39□□□□□ -1.39
USP48-215ENST00000534705 PPP1R9AQ9ULJ8 1098 aa6.39□□□□□ -1.39
USP48-215ENST00000534705 ZNF503-AS2A6NEH8 195 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 TMPRSS2O15393 492 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 ZSCAN22P10073 491 aaPredicted RBP6.38□□□□□ -1.39
USP48-215ENST00000534705 AFMP43652 599 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 GRIA4P48058 902 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 OXCT1P55809 520 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 SPRED3Q2MJR0 410 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 TMC7Q7Z402 723 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 C1QL4Q86Z23 238 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 GALNT12Q8IXK2 581 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 CRIM1Q9NZV1 1036 aa6.38□□□□□ -1.39
USP48-215ENST00000534705 A0A1W2PP55 124 aa6.37□□□□□ -1.39
USP48-215ENST00000534705 CPNE3O75131 537 aaKnown RBP6.37□□□□□ -1.39
USP48-215ENST00000534705 ECEL1O95672 775 aa6.37□□□□□ -1.39
USP48-215ENST00000534705 MAPK1P28482 360 aa6.37□□□□□ -1.39
USP48-215ENST00000534705 LCNL1Q6ZST4 164 aa6.37□□□□□ -1.39
USP48-215ENST00000534705 SND1Q7KZF4 910 aaKnown RBP eCLIP6.37□□□□□ -1.39
USP48-215ENST00000534705 SMYD4Q8IYR2 804 aaPredicted RBP6.37□□□□□ -1.39
USP48-215ENST00000534705 ASB11Q8WXH4 323 aa6.37□□□□□ -1.39
USP48-215ENST00000534705 TCF12Q99081 682 aa6.37□□□□□ -1.39
USP48-215ENST00000534705 PCOLCE2Q9UKZ9 415 aa6.37□□□□□ -1.39
USP48-215ENST00000534705 TREHO43280 583 aa6.36□□□□□ -1.39
USP48-215ENST00000534705 ID3Q02535 119 aa6.36□□□□□ -1.39
USP48-215ENST00000534705 TTLL10Q6ZVT0 673 aa6.36□□□□□ -1.39
USP48-215ENST00000534705 SYDE1Q6ZW31 735 aaPredicted RBP6.36□□□□□ -1.39
USP48-215ENST00000534705 ZSCAN29Q8IWY8 852 aaPredicted RBP6.36□□□□□ -1.39
USP48-215ENST00000534705 TMC1Q8TDI8 760 aa6.36□□□□□ -1.39
USP48-215ENST00000534705 ASB16Q96NS5 453 aa6.36□□□□□ -1.39
USP48-215ENST00000534705 FANCD2OSQ96PS1 177 aa6.36□□□□□ -1.39
USP48-215ENST00000534705 PLAGL2Q9UPG8 496 aa6.36□□□□□ -1.39
USP48-215ENST00000534705 POLR3DP05423 398 aaPredicted RBP6.35□□□□□ -1.39
USP48-215ENST00000534705 ORC1Q13415 861 aa6.35□□□□□ -1.39
USP48-215ENST00000534705 DSC3Q14574 896 aa6.35□□□□□ -1.39
USP48-215ENST00000534705 AEBP1Q8IUX7 1158 aa6.35□□□□□ -1.39
USP48-215ENST00000534705 CSRNP1Q96S65 589 aa6.35□□□□□ -1.39
USP48-215ENST00000534705 DUSP23Q9BVJ7 150 aa6.35□□□□□ -1.39
USP48-215ENST00000534705 TNKS2Q9H2K2 1166 aa6.35□□□□□ -1.39
USP48-215ENST00000534705 NFIBO00712 420 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 EIF1AYO14602 144 aaKnown RBP6.34□□□□□ -1.39
USP48-215ENST00000534705 GLI1P08151 1106 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 LIG1P18858 919 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 FMR1Q06787 632 aaKnown RBP eCLIP6.34□□□□□ -1.39
USP48-215ENST00000534705 KIAA0319Q5VV43 1072 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 AMIGO3Q86WK7 504 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 LIN37Q96GY3 246 aaPredicted RBP6.34□□□□□ -1.39
USP48-215ENST00000534705 NIF3L1Q9GZT8 377 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 ZNF576Q9H609 170 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 LMCD1Q9NZU5 365 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 CTNND2Q9UQB3 1225 aa6.34□□□□□ -1.39
USP48-215ENST00000534705 RNGTTO60942 597 aaKnown RBP6.33□□□□□ -1.4
USP48-215ENST00000534705 LEFTY1O75610 366 aa6.33□□□□□ -1.4
USP48-215ENST00000534705 ITPKAP23677 461 aa6.33□□□□□ -1.4
USP48-215ENST00000534705 PTPN12Q05209 780 aaKnown RBP6.33□□□□□ -1.4
USP48-215ENST00000534705 ZP2Q05996 745 aa6.33□□□□□ -1.4
USP48-215ENST00000534705 IKZF1Q13422 519 aa6.33□□□□□ -1.4
USP48-215ENST00000534705 MPZL3Q6UWV2 235 aa6.33□□□□□ -1.4
USP48-215ENST00000534705 DISC1Q9NRI5 854 aa6.33□□□□□ -1.4
USP48-215ENST00000534705 U3KQE9 123 aa6.33□□□□□ -1.4
USP48-215ENST00000534705 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.32□□□□□ -1.4
USP48-215ENST00000534705 ENOX2Q16206 610 aaKnown RBP6.32□□□□□ -1.4
USP48-215ENST00000534705 USPL1Q5W0Q7 1092 aa6.32□□□□□ -1.4
USP48-215ENST00000534705 PRPF40BQ6NWY9 871 aaKnown RBP6.32□□□□□ -1.4
USP48-215ENST00000534705 HOMEZQ8IX15 550 aa6.32□□□□□ -1.4
USP48-215ENST00000534705 CCDC74AQ96AQ1 378 aa6.32□□□□□ -1.4
USP48-215ENST00000534705 KRT82Q9NSB4 513 aa6.32□□□□□ -1.4
USP48-215ENST00000534705 GTF2IRD1Q9UHL9 959 aa6.32□□□□□ -1.4
USP48-215ENST00000534705 C1QTNF9P0C862 333 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 ITIH2P19823 946 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 BUD31P41223 144 aaPredicted RBP6.31□□□□□ -1.4
USP48-215ENST00000534705 TTLL4Q14679 1199 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 KIF4BQ2VIQ3 1234 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 TMEM67Q5HYA8 995 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 RPS26P11Q5JNZ5 115 aaPredicted RBP6.31□□□□□ -1.4
USP48-215ENST00000534705 FBXO15Q8NCQ5 510 aaPredicted RBP6.31□□□□□ -1.4
USP48-215ENST00000534705 FBF1Q8TES7 1133 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 KIRREL1Q96J84 757 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 CCDC86Q9H6F5 360 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms