RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 NFXL1Q6ZNB6 911 aa22.23■■□□□ 1.15
VPS28-213ENST00000530983 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.23■■□□□ 1.15
VPS28-213ENST00000530983 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.23■■□□□ 1.15
VPS28-213ENST00000530983 CYP19A1P11511 503 aaPredicted RBP22.22■■□□□ 1.15
VPS28-213ENST00000530983 KCNJ6P48051 423 aa22.22■■□□□ 1.15
VPS28-213ENST00000530983 TMEM67Q5HYA8 995 aa22.22■■□□□ 1.15
VPS28-213ENST00000530983 PSDA5PKW4 1024 aaPredicted RBP22.22■■□□□ 1.15
VPS28-213ENST00000530983 PDE8AO60658 829 aa22.22■■□□□ 1.15
VPS28-213ENST00000530983 FGFR2P21802 821 aa22.22■■□□□ 1.15
VPS28-213ENST00000530983 PUM3Q15397 648 aaKnown RBP22.22■■□□□ 1.15
VPS28-213ENST00000530983 OGFRQ9NZT2 677 aa22.22■■□□□ 1.15
VPS28-213ENST00000530983 TACC3Q9Y6A5 838 aa22.22■■□□□ 1.15
VPS28-213ENST00000530983 A0A0U1RQG5 324 aaPredicted RBP22.21■■□□□ 1.15
VPS28-213ENST00000530983 LIFRP42702 1097 aa22.21■■□□□ 1.15
VPS28-213ENST00000530983 TRIM29Q14134 588 aa22.21■■□□□ 1.15
VPS28-213ENST00000530983 METTL16Q86W50 562 aaKnown RBP22.21■■□□□ 1.15
VPS28-213ENST00000530983 HELBQ8NG08 1087 aaPredicted RBP22.21■■□□□ 1.15
VPS28-213ENST00000530983 LPIN2Q92539 896 aa22.21■■□□□ 1.15
VPS28-213ENST00000530983 ZSWIM5Q9P217 1185 aa22.21■■□□□ 1.15
VPS28-213ENST00000530983 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.21■■□□□ 1.15
VPS28-213ENST00000530983 ZBTB1Q9Y2K1 713 aa22.21■■□□□ 1.15
VPS28-213ENST00000530983 V9GYY5 206 aaPredicted RBP22.21■■□□□ 1.15
VPS28-213ENST00000530983 MYL5Q02045 173 aa22.2■■□□□ 1.15
VPS28-213ENST00000530983 CTDSPL2Q05D32 466 aa22.2■■□□□ 1.15
VPS28-213ENST00000530983 IFNL3Q8IZI9 196 aa22.2■■□□□ 1.15
VPS28-213ENST00000530983 ERO1AQ96HE7 468 aa22.2■■□□□ 1.15
VPS28-213ENST00000530983 TIAM2Q8IVF5 1701 aa22.2■■□□□ 1.15
VPS28-213ENST00000530983 STK36Q9NRP7 1315 aa22.2■■□□□ 1.14
VPS28-213ENST00000530983 PATL2C9JE40 543 aaKnown RBP22.2■■□□□ 1.14
VPS28-213ENST00000530983 DHX8Q14562 1220 aaKnown RBP22.2■■□□□ 1.14
VPS28-213ENST00000530983 LONRF3Q496Y0 759 aa22.2■■□□□ 1.14
VPS28-213ENST00000530983 DPF2Q92785 391 aa22.2■■□□□ 1.14
VPS28-213ENST00000530983 SLC26A6Q9BXS9 759 aa22.2■■□□□ 1.14
VPS28-213ENST00000530983 CUTAO60888 179 aa22.19■■□□□ 1.14
VPS28-213ENST00000530983 SPATA5Q8NB90 893 aa22.19■■□□□ 1.14
VPS28-213ENST00000530983 SLC12A7Q9Y666 1083 aa22.19■■□□□ 1.14
VPS28-213ENST00000530983 MBD4O95243 580 aa22.19■■□□□ 1.14
VPS28-213ENST00000530983 FOXP4Q8IVH2 680 aaPredicted RBP22.19■■□□□ 1.14
VPS28-213ENST00000530983 NAPBQ9H115 298 aa22.19■■□□□ 1.14
VPS28-213ENST00000530983 DDX41Q9UJV9 622 aaKnown RBP22.19■■□□□ 1.14
VPS28-213ENST00000530983 KAT6BQ8WYB5 2073 aa22.19■■□□□ 1.14
VPS28-213ENST00000530983 IFIT3O14879 490 aaKnown RBP22.18■■□□□ 1.14
VPS28-213ENST00000530983 SLU7O95391 586 aaKnown RBP22.18■■□□□ 1.14
VPS28-213ENST00000530983 RASGRF1Q13972 1273 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 KRBA2Q6ZNG9 492 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 MAGEB6Q8N7X4 407 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 L2HGDHQ9H9P8 463 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 KCNH3Q9ULD8 1083 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 SLIT2O94813 1529 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 MROH5Q6ZUA9 1318 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 BCL9O00512 1426 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 FMNL1O95466 1100 aaPredicted RBP22.18■■□□□ 1.14
VPS28-213ENST00000530983 UBASH3AP57075 661 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 SSRP1Q08945 709 aaKnown RBP22.18■■□□□ 1.14
VPS28-213ENST00000530983 KMT5BQ4FZB7 885 aa22.18■■□□□ 1.14
VPS28-213ENST00000530983 NOSTRINQ8IVI9 506 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 ZNF397Q8NF99 534 aaPredicted RBP22.17■■□□□ 1.14
VPS28-213ENST00000530983 SYTL4Q96C24 671 aaPredicted RBP22.17■■□□□ 1.14
VPS28-213ENST00000530983 ARMT1Q9H993 441 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 NID2Q14112 1375 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 SNAP23O00161 211 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 IFNAR1P17181 557 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 GUCY1A2P33402 732 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 ELF2Q15723 593 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 SYT10Q6XYQ8 523 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 PCDHA5Q9Y5H7 936 aa22.17■■□□□ 1.14
VPS28-213ENST00000530983 GSG1L2A8MUP6 293 aa22.16■■□□□ 1.14
VPS28-213ENST00000530983 NRDCO43847 1150 aa22.16■■□□□ 1.14
VPS28-213ENST00000530983 SERPINC1P01008 464 aa22.16■■□□□ 1.14
VPS28-213ENST00000530983 BMP6P22004 513 aa22.16■■□□□ 1.14
VPS28-213ENST00000530983 AKNAD1Q5T1N1 836 aa22.16■■□□□ 1.14
VPS28-213ENST00000530983 STK11IPQ8N1F8 1099 aa22.16■■□□□ 1.14
VPS28-213ENST00000530983 CNNM3Q8NE01 707 aa22.16■■□□□ 1.14
VPS28-213ENST00000530983 CNNM2Q9H8M5 875 aa22.16■■□□□ 1.14
VPS28-213ENST00000530983 BTBD18B2RXH4 712 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 MMP1P03956 469 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 TOB1P50616 345 aaPredicted RBP22.15■■□□□ 1.14
VPS28-213ENST00000530983 MAP3K12Q12852 859 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 KRI1Q8N9T8 703 aaKnown RBP22.15■■□□□ 1.14
VPS28-213ENST00000530983 NHSL1Q5SYE7 1610 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 BCORQ6W2J9 1755 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 ERVV-1B6SEH8 477 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 FOXN1O15353 648 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 CBFA2T2O43439 604 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 MDM2Q00987 491 aaPredicted RBP22.15■■□□□ 1.14
VPS28-213ENST00000530983 DZIP3Q86Y13 1208 aaKnown RBP22.15■■□□□ 1.14
VPS28-213ENST00000530983 ZNF34Q8IZ26 560 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 FANCLQ9NW38 375 aa22.15■■□□□ 1.14
VPS28-213ENST00000530983 SLC5A1P13866 664 aa22.14■■□□□ 1.14
VPS28-213ENST00000530983 CFAP100Q494V2 611 aa22.14■■□□□ 1.14
VPS28-213ENST00000530983 CCDC93Q567U6 631 aa22.14■■□□□ 1.14
VPS28-213ENST00000530983 SPECC1Q5M775 1068 aa22.14■■□□□ 1.14
VPS28-213ENST00000530983 OLFM4Q6UX06 510 aa22.14■■□□□ 1.14
VPS28-213ENST00000530983 TMX1Q9H3N1 280 aa22.14■■□□□ 1.14
VPS28-213ENST00000530983 STRCQ7RTU9 1775 aa22.14■■□□□ 1.14
VPS28-213ENST00000530983 PRKAB2O43741 272 aa22.14■■□□□ 1.13
VPS28-213ENST00000530983 PDE4BQ07343 736 aa22.14■■□□□ 1.13
VPS28-213ENST00000530983 FBXO38Q6PIJ6 1188 aa22.14■■□□□ 1.13
VPS28-213ENST00000530983 MFSD6Q6ZSS7 791 aa22.14■■□□□ 1.13
VPS28-213ENST00000530983 VSTM4Q8IW00 320 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms