RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ANTXR1Q9H6X2 564 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 ST7Q9NRC1 585 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.85□□□□□ -0.67
NUP54-215ENST00000514313 MAPK8IP1Q9UQF2 711 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 GFRA2O00451 464 aa10.84□□□□□ -0.67
NUP54-215ENST00000514313 ZNF862O60290 1169 aa10.84□□□□□ -0.67
NUP54-215ENST00000514313 KRT76Q01546 638 aa10.84□□□□□ -0.67
NUP54-215ENST00000514313 SRSF11Q05519 484 aaKnown RBP10.84□□□□□ -0.67
NUP54-215ENST00000514313 LARP1BQ659C4 914 aaKnown RBP10.84□□□□□ -0.67
NUP54-215ENST00000514313 LRP10Q7Z4F1 713 aa10.84□□□□□ -0.67
NUP54-215ENST00000514313 KLHDC7BQ96G42 594 aa10.84□□□□□ -0.67
NUP54-215ENST00000514313 RNPC3Q96LT9 517 aaKnown RBP10.84□□□□□ -0.67
NUP54-215ENST00000514313 CORINQ9Y5Q5 1042 aa10.84□□□□□ -0.67
NUP54-215ENST00000514313 SBNO2Q9Y2G9 1366 aa10.84□□□□□ -0.67
NUP54-215ENST00000514313 TM4SF5O14894 197 aa10.83□□□□□ -0.68
NUP54-215ENST00000514313 HTR3BO95264 441 aa10.83□□□□□ -0.68
NUP54-215ENST00000514313 PDE3AQ14432 1141 aa10.83□□□□□ -0.68
NUP54-215ENST00000514313 MSL1Q68DK7 614 aa10.83□□□□□ -0.68
NUP54-215ENST00000514313 CHSY3Q70JA7 882 aa10.83□□□□□ -0.68
NUP54-215ENST00000514313 MICAL1Q8TDZ2 1067 aa10.83□□□□□ -0.68
NUP54-215ENST00000514313 ERBB4Q15303 1308 aa10.83□□□□□ -0.68
NUP54-215ENST00000514313 PRR36Q9H6K5 1346 aa10.83□□□□□ -0.68
NUP54-215ENST00000514313 MEIS3P2A8K0S8 358 aa10.82□□□□□ -0.68
NUP54-215ENST00000514313 PPM1GO15355 546 aaPredicted RBP10.82□□□□□ -0.68
NUP54-215ENST00000514313 EIF4EBP3O60516 100 aaPredicted RBP10.82□□□□□ -0.68
NUP54-215ENST00000514313 LIG1P18858 919 aa10.82□□□□□ -0.68
NUP54-215ENST00000514313 CASP7P55210 303 aa10.82□□□□□ -0.68
NUP54-215ENST00000514313 NLRP12P59046 1061 aa10.82□□□□□ -0.68
NUP54-215ENST00000514313 PPP2R5EQ16537 467 aa10.82□□□□□ -0.68
NUP54-215ENST00000514313 WDR89Q96FK6 387 aaPredicted RBP10.82□□□□□ -0.68
NUP54-215ENST00000514313 USP26Q9BXU7 913 aa10.82□□□□□ -0.68
NUP54-215ENST00000514313 CCDC113Q9H0I3 377 aa10.82□□□□□ -0.68
NUP54-215ENST00000514313 ADAMTS2O95450 1211 aa10.81□□□□□ -0.68
NUP54-215ENST00000514313 EDARADDQ8WWZ3 215 aa10.81□□□□□ -0.68
NUP54-215ENST00000514313 SNCAIPQ9Y6H5 919 aa10.81□□□□□ -0.68
NUP54-215ENST00000514313 ENPP3O14638 875 aa10.8□□□□□ -0.68
NUP54-215ENST00000514313 HSD3B2P26439 372 aa10.8□□□□□ -0.68
NUP54-215ENST00000514313 SETDB1Q15047 1291 aa10.8□□□□□ -0.68
NUP54-215ENST00000514313 FXNQ16595 210 aa10.8□□□□□ -0.68
NUP54-215ENST00000514313 C19orf47Q8N9M1 422 aaKnown RBP10.8□□□□□ -0.68
NUP54-215ENST00000514313 GALNT11Q8NCW6 608 aa10.8□□□□□ -0.68
NUP54-215ENST00000514313 TMEM40Q8WWA1 233 aa10.8□□□□□ -0.68
NUP54-215ENST00000514313 REV1Q9UBZ9 1251 aa10.8□□□□□ -0.68
NUP54-215ENST00000514313 LOC100289279A0A1B0GTE1 492 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 DCDC2CA8MYV0 355 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 B2RBV5 119 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 PDPK1O15530 556 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 ADAM11O75078 769 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 SUZ12Q15022 739 aaKnown RBP10.79□□□□□ -0.68
NUP54-215ENST00000514313 KIF4BQ2VIQ3 1234 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 HDXQ7Z353 690 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 TTC6Q86TZ1 520 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 KLHL23Q8NBE8 558 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 GALNT6Q8NCL4 622 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 ELMO3Q96BJ8 720 aa10.79□□□□□ -0.68
NUP54-215ENST00000514313 A0A1W2PQH9 124 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 SHISA8B8ZZ34 492 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 DDX3YO15523 660 aaKnown RBP10.78□□□□□ -0.68
NUP54-215ENST00000514313 GJB6O95452 261 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 GUCY2CP25092 1073 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 RASGRF1Q13972 1273 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 LRRFIP1Q32MZ4 808 aaKnown RBP10.78□□□□□ -0.68
NUP54-215ENST00000514313 OVOS1Q6IE37 1185 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 DNAJC7Q99615 494 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 TM9SF2Q99805 663 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 KANSL2Q9H9L4 492 aa10.78□□□□□ -0.68
NUP54-215ENST00000514313 DNAJA2O60884 412 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 PLCG1P19174 1290 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 IFRD2Q12894 506 aaPredicted RBP10.77□□□□□ -0.69
NUP54-215ENST00000514313 FOXD4L6Q3SYB3 417 aaPredicted RBP10.77□□□□□ -0.69
NUP54-215ENST00000514313 FOXD4L3Q6VB84 417 aaPredicted RBP10.77□□□□□ -0.69
NUP54-215ENST00000514313 CYFIP1Q7L576 1253 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 LILRB2Q8N423 598 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 SH3TC2Q8TF17 1288 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 BTBD6Q96KE9 485 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 PRDM6Q9NQX0 595 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 PCDHGC5Q9Y5F6 944 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 CSADQ9Y600 493 aa10.77□□□□□ -0.69
NUP54-215ENST00000514313 PRAMEF27A3QJZ7 478 aa10.76□□□□□ -0.69
NUP54-215ENST00000514313 OIP5O43482 229 aa10.76□□□□□ -0.69
NUP54-215ENST00000514313 DLGAP3O95886 979 aa10.76□□□□□ -0.69
NUP54-215ENST00000514313 NID1P14543 1247 aa10.76□□□□□ -0.69
NUP54-215ENST00000514313 HNRNPUQ00839 825 aaKnown RBP eCLIP10.76□□□□□ -0.69
NUP54-215ENST00000514313 C6orf15Q6UXA7 325 aaPredicted RBP10.76□□□□□ -0.69
NUP54-215ENST00000514313 DMRTC2Q8IXT2 367 aaPredicted RBP10.76□□□□□ -0.69
NUP54-215ENST00000514313 ZSCAN1Q8NBB4 408 aa10.76□□□□□ -0.69
NUP54-215ENST00000514313 WDR18Q9BV38 432 aa10.76□□□□□ -0.69
NUP54-215ENST00000514313 GMIPQ9P107 970 aa10.76□□□□□ -0.69
NUP54-215ENST00000514313 TERTO14746 1132 aaKnown RBP10.75□□□□□ -0.69
NUP54-215ENST00000514313 DDAH1O94760 285 aa10.75□□□□□ -0.69
NUP54-215ENST00000514313 COL9A3Q14050 684 aaPredicted RBP10.75□□□□□ -0.69
NUP54-215ENST00000514313 ILDR2Q71H61 639 aa10.75□□□□□ -0.69
NUP54-215ENST00000514313 C12orf40Q86WS4 652 aa10.75□□□□□ -0.69
NUP54-215ENST00000514313 KCNK4Q9NYG8 393 aa10.75□□□□□ -0.69
NUP54-215ENST00000514313 TACC3Q9Y6A5 838 aa10.75□□□□□ -0.69
NUP54-215ENST00000514313 UPK3BL1B0FP48 263 aa10.74□□□□□ -0.69
NUP54-215ENST00000514313 UPK3BL2E5RIL1 263 aa10.74□□□□□ -0.69
NUP54-215ENST00000514313 ACRP10323 421 aa10.74□□□□□ -0.69
NUP54-215ENST00000514313 CDK11BP21127 795 aaKnown RBP10.74□□□□□ -0.69
NUP54-215ENST00000514313 PDE4BQ07343 736 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms