RNA–Protein interactions for RNA: ENST00000479894.1

HDLBP-238, Transcript of high density lipoprotein binding protein, human

TSL 5

Gene HDLBP, Length 840 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDLBP-238	ENST00000479894	YTHDC1	Q96MU7	727 aa	Known RBP	19.51	■□□□□ 0.71
HDLBP-238	ENST00000479894	VCAN	P13611	3396 aa		19.51	■□□□□ 0.71
HDLBP-238	ENST00000479894	RPTOR	Q8N122	1335 aa		19.51	■□□□□ 0.71
HDLBP-238	ENST00000479894		A0A0G2JLL6	359 aa	Predicted RBP	19.5	■□□□□ 0.71
HDLBP-238	ENST00000479894	CHAF1A	Q13111	956 aa	Predicted RBP	19.5	■□□□□ 0.71
HDLBP-238	ENST00000479894	EPHA10	Q5JZY3	1008 aa		19.5	■□□□□ 0.71
HDLBP-238	ENST00000479894	PRRT2	Q7Z6L0	340 aa	Predicted RBP	19.5	■□□□□ 0.71
HDLBP-238	ENST00000479894	COA7	Q96BR5	231 aa		19.5	■□□□□ 0.71
HDLBP-238	ENST00000479894	UBE2O	Q9C0C9	1292 aa	Known RBP	19.5	■□□□□ 0.71
HDLBP-238	ENST00000479894	MROH5	Q6ZUA9	1318 aa		19.5	■□□□□ 0.71
HDLBP-238	ENST00000479894	FRAT2	O75474	233 aa	Predicted RBP	19.49	■□□□□ 0.71
HDLBP-238	ENST00000479894	EXOSC9	Q06265	439 aa	Known RBP	19.49	■□□□□ 0.71
HDLBP-238	ENST00000479894	CAVIN4	Q5BKX8	364 aa		19.49	■□□□□ 0.71
HDLBP-238	ENST00000479894	CDCA7L	Q96GN5	454 aa		19.49	■□□□□ 0.71
HDLBP-238	ENST00000479894	SPINK5	Q9NQ38	1064 aa	Predicted RBP	19.49	■□□□□ 0.71
HDLBP-238	ENST00000479894	DOCK1	Q14185	1865 aa		19.48	■□□□□ 0.71
HDLBP-238	ENST00000479894	BEND3	Q5T5X7	828 aa		19.48	■□□□□ 0.71
HDLBP-238	ENST00000479894	C11orf49	Q9H6J7	331 aa		19.48	■□□□□ 0.71
HDLBP-238	ENST00000479894	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	19.48	■□□□□ 0.71
HDLBP-238	ENST00000479894	POTEB2	H3BUK9	544 aa		19.47	■□□□□ 0.71
HDLBP-238	ENST00000479894	GRM8	O00222	908 aa		19.47	■□□□□ 0.71
HDLBP-238	ENST00000479894	SYN1	P17600	705 aa		19.47	■□□□□ 0.71
HDLBP-238	ENST00000479894	SMCR8	Q8TEV9	937 aa	Predicted RBP	19.47	■□□□□ 0.71
HDLBP-238	ENST00000479894	COL2A1	P02458	1487 aa	Predicted RBP	19.47	■□□□□ 0.71
HDLBP-238	ENST00000479894	HMGCR	P04035	888 aa		19.46	■□□□□ 0.71
HDLBP-238	ENST00000479894	HMX1	Q9NP08	348 aa	Predicted RBP	19.46	■□□□□ 0.71
HDLBP-238	ENST00000479894	PRDM6	Q9NQX0	595 aa		19.46	■□□□□ 0.71
HDLBP-238	ENST00000479894	LAMA2	P24043	3122 aa	Known RBP	19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	FAM110C	Q1W6H9	321 aa		19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	SCYL3	Q8IZE3	742 aa		19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	GUCD1	Q96NT3	240 aa		19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	PUS3	Q9BZE2	481 aa	Known RBP	19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	TAOK2	Q9UL54	1235 aa		19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	OGDHL	Q9ULD0	1010 aa		19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	AFG3L2	Q9Y4W6	797 aa		19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	ZHX2	Q9Y6X8	837 aa		19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	KIF16B	Q96L93	1317 aa		19.45	■□□□□ 0.7
HDLBP-238	ENST00000479894	PLXNB2	O15031	1838 aa		19.44	■□□□□ 0.7
HDLBP-238	ENST00000479894	VAMP4	O75379	141 aa		19.44	■□□□□ 0.7
HDLBP-238	ENST00000479894	TCP10	Q12799	353 aa		19.44	■□□□□ 0.7
HDLBP-238	ENST00000479894	GADL1	Q6ZQY3	521 aa		19.44	■□□□□ 0.7
HDLBP-238	ENST00000479894	PICK1	Q9NRD5	415 aa		19.44	■□□□□ 0.7
HDLBP-238	ENST00000479894	SPTBN5	Q9NRC6	3674 aa	Known RBP	19.44	■□□□□ 0.7
HDLBP-238	ENST00000479894	PHF20L1	A8MW92	1017 aa		19.43	■□□□□ 0.7
HDLBP-238	ENST00000479894	PTPRA	P18433	802 aa		19.43	■□□□□ 0.7
HDLBP-238	ENST00000479894	PNMA3	Q9UL41	463 aa		19.43	■□□□□ 0.7
HDLBP-238	ENST00000479894	ATRNL1	Q5VV63	1379 aa		19.43	■□□□□ 0.7
HDLBP-238	ENST00000479894	TTC28	Q96AY4	2481 aa		19.42	■□□□□ 0.7
HDLBP-238	ENST00000479894	ALDH1L2	Q3SY69	923 aa		19.42	■□□□□ 0.7
HDLBP-238	ENST00000479894	CDC42EP5	Q6NZY7	148 aa		19.42	■□□□□ 0.7
HDLBP-238	ENST00000479894	ANKRD13C	Q8N6S4	541 aa		19.42	■□□□□ 0.7
HDLBP-238	ENST00000479894	C9orf78	Q9NZ63	289 aa	Predicted RBP	19.42	■□□□□ 0.7
HDLBP-238	ENST00000479894	AGTPBP1	Q9UPW5	1226 aa		19.42	■□□□□ 0.7
HDLBP-238	ENST00000479894	LOC285556	D6RIA3	1793 aa		19.42	■□□□□ 0.7
HDLBP-238	ENST00000479894	MYH2	Q9UKX2	1941 aa		19.41	■□□□□ 0.7
HDLBP-238	ENST00000479894	PDE8B	O95263	885 aa		19.41	■□□□□ 0.7
HDLBP-238	ENST00000479894	NFIA	Q12857	509 aa		19.41	■□□□□ 0.7
HDLBP-238	ENST00000479894	VGLL2	Q8N8G2	317 aa		19.41	■□□□□ 0.7
HDLBP-238	ENST00000479894	WDR66	Q8TBY9	1149 aa		19.41	■□□□□ 0.7
HDLBP-238	ENST00000479894	FAM198A	Q9UFP1	575 aa		19.41	■□□□□ 0.7
HDLBP-238	ENST00000479894	DAGLA	Q9Y4D2	1042 aa		19.41	■□□□□ 0.7
HDLBP-238	ENST00000479894	EYS	Q5T1H1	3165 aa		19.41	■□□□□ 0.7
HDLBP-238	ENST00000479894	MAP3K10	Q02779	954 aa		19.4	■□□□□ 0.7
HDLBP-238	ENST00000479894	PFAS	O15067	1338 aa		19.4	■□□□□ 0.7
HDLBP-238	ENST00000479894	PRUNE2	Q8WUY3	3088 aa		19.39	■□□□□ 0.69
HDLBP-238	ENST00000479894		F6X3S4	739 aa		19.39	■□□□□ 0.69
HDLBP-238	ENST00000479894	ALDH1L1	O75891	902 aa		19.39	■□□□□ 0.69
HDLBP-238	ENST00000479894	GCLC	P48506	637 aa	Predicted RBP	19.39	■□□□□ 0.69
HDLBP-238	ENST00000479894	METTL24	Q5JXM2	366 aa		19.39	■□□□□ 0.69
HDLBP-238	ENST00000479894	GJD2	Q9UKL4	321 aa		19.39	■□□□□ 0.69
HDLBP-238	ENST00000479894	CTNND1	O60716	968 aa	Known RBP	19.38	■□□□□ 0.69
HDLBP-238	ENST00000479894	COL6A1	P12109	1028 aa		19.38	■□□□□ 0.69
HDLBP-238	ENST00000479894	FRMPD3	Q5JV73	1810 aa		19.38	■□□□□ 0.69
HDLBP-238	ENST00000479894	MAST2	Q6P0Q8	1798 aa		19.38	■□□□□ 0.69
HDLBP-238	ENST00000479894	ATAD5	Q96QE3	1844 aa		19.37	■□□□□ 0.69
HDLBP-238	ENST00000479894	ENTPD3	O75355	529 aa		19.37	■□□□□ 0.69
HDLBP-238	ENST00000479894	MAP3K21	Q5TCX8	1036 aa		19.37	■□□□□ 0.69
HDLBP-238	ENST00000479894	ZNF697	Q5TEC3	545 aa		19.37	■□□□□ 0.69
HDLBP-238	ENST00000479894	PROCA1	Q8NCQ7	364 aa	Predicted RBP	19.37	■□□□□ 0.69
HDLBP-238	ENST00000479894	KAZALD1	Q96I82	304 aa		19.37	■□□□□ 0.69
HDLBP-238	ENST00000479894	SUCLG2	Q96I99	432 aa		19.37	■□□□□ 0.69
HDLBP-238	ENST00000479894	USP40	Q9NVE5	1235 aa		19.37	■□□□□ 0.69
HDLBP-238	ENST00000479894	IFIT1	P09914	478 aa	Known RBP	19.36	■□□□□ 0.69
HDLBP-238	ENST00000479894	LRRC24	Q50LG9	513 aa		19.36	■□□□□ 0.69
HDLBP-238	ENST00000479894	SYMPK	Q92797	1274 aa	Known RBP	19.36	■□□□□ 0.69
HDLBP-238	ENST00000479894	IDI2	Q9BXS1	227 aa		19.36	■□□□□ 0.69
HDLBP-238	ENST00000479894	LRRFIP2	Q9Y608	721 aa	Known RBP	19.36	■□□□□ 0.69
HDLBP-238	ENST00000479894	DNAH12	Q6ZR08	3092 aa		19.36	■□□□□ 0.69
HDLBP-238	ENST00000479894	TRIM75P	A6NK02	468 aa		19.35	■□□□□ 0.69
HDLBP-238	ENST00000479894	FGFR2	P21802	821 aa		19.35	■□□□□ 0.69
HDLBP-238	ENST00000479894	MDM2	Q00987	491 aa	Predicted RBP	19.35	■□□□□ 0.69
HDLBP-238	ENST00000479894	TRIM32	Q13049	653 aa		19.35	■□□□□ 0.69
HDLBP-238	ENST00000479894	DIXDC1	Q155Q3	683 aa		19.35	■□□□□ 0.69
HDLBP-238	ENST00000479894	RABL6	Q3YEC7	729 aa	Predicted RBP	19.35	■□□□□ 0.69
HDLBP-238	ENST00000479894	ZFPM1	Q8IX07	1006 aa		19.35	■□□□□ 0.69
HDLBP-238	ENST00000479894	TRIB2	Q92519	343 aa		19.35	■□□□□ 0.69
HDLBP-238	ENST00000479894	IPO8	O15397	1037 aa	Known RBP	19.34	■□□□□ 0.69
HDLBP-238	ENST00000479894	PABPC4	Q13310	644 aa	Known RBP eCLIP	19.34	■□□□□ 0.69	4e-13	■■□□□ 14.4
HDLBP-238	ENST00000479894	PUM3	Q15397	648 aa	Known RBP	19.34	■□□□□ 0.69
HDLBP-238	ENST00000479894	SRCIN1	Q9C0H9	1055 aa		19.34	■□□□□ 0.69

Retrieved 100 of 20,778 RNA–protein pairs in 121 ms