RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 ZNF296Q8WUU4 475 aaPredicted RBP7.98□□□□□ -1.13
UPF3A-205ENST00000479712 ARMC5Q96C12 935 aa7.98□□□□□ -1.13
UPF3A-205ENST00000479712 MDFIQ99750 246 aa7.98□□□□□ -1.13
UPF3A-205ENST00000479712 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.98□□□□□ -1.132e-8■■■■■ 40.2
UPF3A-205ENST00000479712 GGA1Q9UJY5 639 aa7.98□□□□□ -1.13
UPF3A-205ENST00000479712 SOX13Q9UN79 622 aa7.98□□□□□ -1.13
UPF3A-205ENST00000479712 ERBB4Q15303 1308 aa7.98□□□□□ -1.13
UPF3A-205ENST00000479712 PLCH2O75038 1416 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 ELOA3CA0A087WX78 387 aaPredicted RBP7.97□□□□□ -1.13
UPF3A-205ENST00000479712 ELOA3DA6NLF2 546 aaPredicted RBP7.97□□□□□ -1.13
UPF3A-205ENST00000479712 B3GALT4O96024 378 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 PF4P02776 101 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 FGRP09769 529 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 PRELPP51888 382 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 RPS26P62854 115 aaKnown RBP7.97□□□□□ -1.13
UPF3A-205ENST00000479712 ELOA3BQ3SY89 546 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 SNAP47Q5SQN1 464 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 PSAPL1Q6NUJ1 521 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 FBXL19Q6PCT2 694 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 ADAMTSL4Q6UY14 1074 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 AGMOQ6ZNB7 445 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 VN1R5Q7Z5H4 357 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 MCF2L2Q86YR7 1114 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 ELOA3Q8NG57 546 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 SPATA32Q96LK8 384 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 DNAJC2Q99543 621 aaKnown RBP7.97□□□□□ -1.13
UPF3A-205ENST00000479712 ADAM19Q9H013 955 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 KCNQ5Q9NR82 932 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 SAMM50Q9Y512 469 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 SUPT16HQ9Y5B9 1047 aaKnown RBP7.97□□□□□ -1.13
UPF3A-205ENST00000479712 ITSN2Q9NZM3 1697 aa7.97□□□□□ -1.13
UPF3A-205ENST00000479712 ADGBQ8N7X0 1667 aa7.96□□□□□ -1.13
UPF3A-205ENST00000479712 TFE3P19532 575 aaPredicted RBP7.96□□□□□ -1.14
UPF3A-205ENST00000479712 LMNB1P20700 586 aa7.96□□□□□ -1.14
UPF3A-205ENST00000479712 ALAS2P22557 587 aa7.96□□□□□ -1.14
UPF3A-205ENST00000479712 LMNB2Q03252 620 aa7.96□□□□□ -1.14
UPF3A-205ENST00000479712 CAMK2GQ13555 558 aaPredicted RBP7.96□□□□□ -1.14
UPF3A-205ENST00000479712 GDF6Q6KF10 455 aaPredicted RBP7.96□□□□□ -1.14
UPF3A-205ENST00000479712 EAF1Q96JC9 268 aaPredicted RBP7.96□□□□□ -1.14
UPF3A-205ENST00000479712 ABCC1P33527 1531 aa7.96□□□□□ -1.14
UPF3A-205ENST00000479712 REREQ9P2R6 1566 aa7.96□□□□□ -1.14
UPF3A-205ENST00000479712 RGS9O75916 674 aaPredicted RBP7.95□□□□□ -1.14
UPF3A-205ENST00000479712 CDC27P30260 824 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 CABP4P57796 275 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 ZNF423Q2M1K9 1284 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 AFAP1Q8N556 730 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 GOLGA6L1Q8N7Z2 621 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 GOLM1Q8NBJ4 401 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 TTC9Q92623 222 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 NT5C1AQ9BXI3 368 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 SH2B1Q9NRF2 756 aaPredicted RBP7.95□□□□□ -1.14
UPF3A-205ENST00000479712 SHPRHQ149N8 1683 aa7.95□□□□□ -1.14
UPF3A-205ENST00000479712 ESRRAP11474 423 aaPredicted RBP7.94□□□□□ -1.14
UPF3A-205ENST00000479712 GARTP22102 1010 aa7.94□□□□□ -1.14
UPF3A-205ENST00000479712 NME2P22392 152 aa7.94□□□□□ -1.14
UPF3A-205ENST00000479712 IKBKEQ14164 716 aa7.94□□□□□ -1.14
UPF3A-205ENST00000479712 R3HDM1Q15032 1099 aaKnown RBP7.94□□□□□ -1.14
UPF3A-205ENST00000479712 SLCO4C1Q6ZQN7 724 aa7.94□□□□□ -1.14
UPF3A-205ENST00000479712 NUDT8Q8WV74 236 aa7.94□□□□□ -1.14
UPF3A-205ENST00000479712 SEC16BQ96JE7 1060 aa7.94□□□□□ -1.14
UPF3A-205ENST00000479712 COL25A1Q9BXS0 654 aaPredicted RBP7.94□□□□□ -1.14
UPF3A-205ENST00000479712 GDF2Q9UK05 429 aaPredicted RBP7.94□□□□□ -1.14
UPF3A-205ENST00000479712 BLMP54132 1417 aaPredicted RBP7.94□□□□□ -1.14
UPF3A-205ENST00000479712 FGD6Q6ZV73 1430 aa7.94□□□□□ -1.14
UPF3A-205ENST00000479712 MED14O60244 1454 aa7.94□□□□□ -1.14
UPF3A-205ENST00000479712 GREM1O60565 184 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 STK10O94804 968 aaKnown RBP7.93□□□□□ -1.14
UPF3A-205ENST00000479712 VSIG8P0DPA2 414 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 EPHA1P21709 976 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 RNFT1Q5M7Z0 435 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 SULF2Q8IWU5 870 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 TRIM42Q8IWZ5 723 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 CACTIN-AS1Q8N1I8 211 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 DDX54Q8TDD1 881 aaKnown RBP7.93□□□□□ -1.14
UPF3A-205ENST00000479712 MIR1-1HGQ9H1L0 117 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 JPH1Q9HDC5 661 aaPredicted RBP7.93□□□□□ -1.14
UPF3A-205ENST00000479712 UBP1Q9NZI7 540 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 EFR3BQ9Y2G0 817 aa7.93□□□□□ -1.14
UPF3A-205ENST00000479712 H3BRJ5 948 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 SSBP05455 408 aaKnown RBP eCLIP7.92□□□□□ -1.14
UPF3A-205ENST00000479712 BMP6P22004 513 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 NASPP49321 788 aaPredicted RBP7.92□□□□□ -1.14
UPF3A-205ENST00000479712 APOBRQ0VD83 1088 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 LRRC14Q15048 493 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 RASIP1Q5U651 963 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 FAM196AQ6ZSG2 479 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 DPH6Q7L8W6 267 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 HIRIP3Q9BW71 556 aaPredicted RBP7.92□□□□□ -1.14
UPF3A-205ENST00000479712 CBX8Q9HC52 389 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 GINM1Q9NU53 330 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 CYP8B1Q9UNU6 501 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 PCDHB5Q9Y5E4 795 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 TMEM94Q12767 1356 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 DEPDC5O75140 1603 aa7.92□□□□□ -1.14
UPF3A-205ENST00000479712 CDC25BP30305 580 aa7.91□□□□□ -1.14
UPF3A-205ENST00000479712 SRSF11Q05519 484 aaKnown RBP7.91□□□□□ -1.14
UPF3A-205ENST00000479712 COL9A2Q14055 689 aaPredicted RBP7.91□□□□□ -1.14
UPF3A-205ENST00000479712 LLGL2Q6P1M3 1020 aa7.91□□□□□ -1.14
UPF3A-205ENST00000479712 BNC2Q6ZN30 1099 aaPredicted RBP7.91□□□□□ -1.14
UPF3A-205ENST00000479712 EMILIN2Q9BXX0 1053 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms