RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 ATP2B1P20020 1258 aa12.52□□□□□ -0.4
VPS52-217ENST00000478934 TDO2P48775 406 aa12.52□□□□□ -0.4
VPS52-217ENST00000478934 MAP3K12Q12852 859 aa12.52□□□□□ -0.4
VPS52-217ENST00000478934 PNOCQ13519 176 aa12.52□□□□□ -0.4
VPS52-217ENST00000478934 CCDC24Q8N4L8 307 aa12.52□□□□□ -0.4
VPS52-217ENST00000478934 SLC12A7Q9Y666 1083 aa12.52□□□□□ -0.4
VPS52-217ENST00000478934 NUP98P52948 1817 aa12.52□□□□□ -0.4
VPS52-217ENST00000478934 ATP1A3P13637 1013 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 CHRNDQ07001 517 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 PTPAQ15257 358 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 HSP90AA4PQ58FG1 418 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 BICDL1Q6ZP65 573 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 MRFAP1L1Q96HT8 127 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 MAP3K14Q99558 947 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 IFNKQ9P0W0 207 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 LRP2BPQ9P2M1 347 aa12.52□□□□□ -0.41
VPS52-217ENST00000478934 LOC102724428A0A0B4J2F2 783 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 MINDY4BA8MYZ0 360 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 LMOD1P29536 600 aaPredicted RBP12.51□□□□□ -0.41
VPS52-217ENST00000478934 SIK1P57059 783 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 NCBP1Q09161 790 aaKnown RBP12.51□□□□□ -0.41
VPS52-217ENST00000478934 MTERF4Q7Z6M4 381 aaKnown RBP12.51□□□□□ -0.41
VPS52-217ENST00000478934 NUP133Q8WUM0 1156 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS52-217ENST00000478934 XPO4Q9C0E2 1151 aaKnown RBP12.51□□□□□ -0.41
VPS52-217ENST00000478934 ATRNO75882 1429 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 MYH7P12883 1935 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 NUTM2BA6NNL0 878 aaPredicted RBP12.51□□□□□ -0.41
VPS52-217ENST00000478934 NUTM2EB1AL46 878 aaPredicted RBP12.51□□□□□ -0.41
VPS52-217ENST00000478934 NPHP1O15259 732 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 SMC2O95347 1197 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 CMA1P23946 247 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 NR5A1Q13285 461 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 AKNAD1Q5T1N1 836 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 MFSD6Q6ZSS7 791 aa12.51□□□□□ -0.41
VPS52-217ENST00000478934 NUTM2AQ8IVF1 878 aaPredicted RBP12.51□□□□□ -0.41
VPS52-217ENST00000478934 FOXP4Q8IVH2 680 aaPredicted RBP12.51□□□□□ -0.41
VPS52-217ENST00000478934 C4AP0C0L4 1744 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 C4BP0C0L5 1744 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 WDR19Q8NEZ3 1342 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 NTSR2O95665 410 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 CAVIN2O95810 425 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 CDC25BP30305 580 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 SYKP43405 635 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 CCZ1BP86790 482 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 CCZ1P86791 482 aaPredicted RBP12.5□□□□□ -0.41
VPS52-217ENST00000478934 NCAPHQ15003 741 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 DDB1Q16531 1140 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 LONRF3Q496Y0 759 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 PTF1AQ7RTS3 328 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 SLC51AQ86UW1 340 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 OXER1Q8TDS5 423 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 TMEM87BQ96K49 555 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 PRDM1O75626 825 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 TOB1P50616 345 aaPredicted RBP12.5□□□□□ -0.41
VPS52-217ENST00000478934 DYNLL1P63167 89 aaKnown RBP12.5□□□□□ -0.41
VPS52-217ENST00000478934 CEP135Q66GS9 1140 aa12.5□□□□□ -0.41
VPS52-217ENST00000478934 CYP7A1P22680 504 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 KLRK1P26718 216 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 GOLGA8FQ08AF8 430 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 GOLGA8DPQ0D2H9 430 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 ZRSR1Q15695 479 aaKnown RBP12.49□□□□□ -0.41
VPS52-217ENST00000478934 SGMS1Q86VZ5 419 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 DPF2Q92785 391 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 CHMP4CQ96CF2 233 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 SHISA4Q96DD7 197 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 HSD3B7Q9H2F3 369 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 JAG2Q9Y219 1238 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 FAM205CA6NFA0 338 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 CTIFO43310 598 aaKnown RBP12.49□□□□□ -0.41
VPS52-217ENST00000478934 IGHMBP2P38935 993 aaKnown RBP12.49□□□□□ -0.41
VPS52-217ENST00000478934 NLRP12P59046 1061 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 SSRP1Q08945 709 aaKnown RBP12.49□□□□□ -0.41
VPS52-217ENST00000478934 ALX1Q15699 326 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 ERFEQ4G0M1 354 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 TMC6Q7Z403 805 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 GRAMD1CQ8IYS0 662 aa12.49□□□□□ -0.41
VPS52-217ENST00000478934 ZHX1Q9UKY1 873 aaPredicted RBP12.49□□□□□ -0.41
VPS52-217ENST00000478934 SLC4A8Q2Y0W8 1093 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 CCDC152Q4G0S7 254 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 METTL16Q86W50 562 aaKnown RBP12.48□□□□□ -0.41
VPS52-217ENST00000478934 CCDC112Q8NEF3 446 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 NAT10Q9H0A0 1025 aaKnown RBP12.48□□□□□ -0.41
VPS52-217ENST00000478934 RAI14Q9P0K7 980 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 MYH3P11055 1940 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 CDKL5O76039 1030 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 ARMCX5Q6P1M9 558 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 CPLX2Q6PUV4 134 aaKnown RBP12.48□□□□□ -0.41
VPS52-217ENST00000478934 USP49Q70CQ1 688 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 DIS3L2Q8IYB7 885 aaKnown RBP12.48□□□□□ -0.41
VPS52-217ENST00000478934 ANKRD7Q92527 254 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 HPSEQ9Y251 543 aa12.48□□□□□ -0.41
VPS52-217ENST00000478934 NHSL1Q5SYE7 1610 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 SMTNL1A8MU46 457 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 FMNL1O95466 1100 aaPredicted RBP12.47□□□□□ -0.41
VPS52-217ENST00000478934 BMP6P22004 513 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 LIFRP42702 1097 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 PDE4BQ07343 736 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 TRIM29Q14134 588 aa12.47□□□□□ -0.41
VPS52-217ENST00000478934 WTAPQ15007 396 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms