RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 AKAP4Q5JQC9 854 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 CIAPIN1Q6FI81 312 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 CTU1Q7Z7A3 348 aaKnown RBP6.5□□□□□ -1.37
PTPN4-206ENST00000441089 KRTAP19-1Q8IUB9 90 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 CRISPLD1Q9H336 500 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 SAGE1Q9NXZ1 904 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 SRP68Q9UHB9 627 aaKnown RBP6.5□□□□□ -1.37
PTPN4-206ENST00000441089 SLX4Q8IY92 1834 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 TTC28Q96AY4 2481 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 ANKRD31Q8N7Z5 1873 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 UNC80Q8N2C7 3258 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 CENPFP49454 3210 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 NR1H3Q13133 447 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 DDX10Q13206 875 aaKnown RBP6.49□□□□□ -1.37
PTPN4-206ENST00000441089 RNF20Q5VTR2 975 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 DIEXFQ68CQ4 756 aaKnown RBP6.49□□□□□ -1.37
PTPN4-206ENST00000441089 SAPCD2Q86UD0 394 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 ZNF622Q969S3 477 aaKnown RBP eCLIP6.49□□□□□ -1.37
PTPN4-206ENST00000441089 COG3Q96JB2 828 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 ZCCHC2Q9C0B9 1178 aaKnown RBP6.49□□□□□ -1.37
PTPN4-206ENST00000441089 ETNK1Q9HBU6 452 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 TPSG1Q9NRR2 321 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 TERF2IPQ9NYB0 399 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 RNF123Q5XPI4 1314 aa6.49□□□□□ -1.37
PTPN4-206ENST00000441089 SERPINB2P05120 415 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 CD33P20138 364 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 LMOD1P29536 600 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-206ENST00000441089 PDE6BP35913 854 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 CRKLP46109 303 aaKnown RBP6.48□□□□□ -1.37
PTPN4-206ENST00000441089 EFHC2Q5JST6 749 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 CST9Q5W186 159 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 TMEM214Q6NUQ4 689 aaKnown RBP6.48□□□□□ -1.37
PTPN4-206ENST00000441089 GPC2Q8N158 579 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 PGBD3Q8N328 593 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 MTMR14Q8NCE2 650 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 SLC4A9Q96Q91 983 aa6.48□□□□□ -1.37
PTPN4-206ENST00000441089 HTTP42858 3142 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 DCDC2BA2VCK2 349 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 GATA4P43694 442 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 NFIXQ14938 502 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 GNASQ5JWF2 1037 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 BICDL1Q6ZP65 573 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 IFNL2Q8IZJ0 200 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 ZNF592Q92610 1267 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 POLR3GLQ9BT43 218 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 PLVAPQ9BX97 442 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 NOP53Q9NZM5 478 aaKnown RBP6.47□□□□□ -1.37
PTPN4-206ENST00000441089 NDUFB9Q9Y6M9 179 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 COL11A2P13942 1736 aaPredicted RBP6.47□□□□□ -1.37
PTPN4-206ENST00000441089 ZNF541Q9H0D2 1346 aa6.47□□□□□ -1.37
PTPN4-206ENST00000441089 ERVV-2B6SEH9 535 aa6.46□□□□□ -1.38
PTPN4-206ENST00000441089 CELF2O95319 508 aaKnown RBP6.46□□□□□ -1.38
PTPN4-206ENST00000441089 PLA2G4AP47712 749 aa6.46□□□□□ -1.38
PTPN4-206ENST00000441089 USPL1Q5W0Q7 1092 aa6.46□□□□□ -1.38
PTPN4-206ENST00000441089 USP50Q70EL3 339 aaPredicted RBP6.46□□□□□ -1.38
PTPN4-206ENST00000441089 ZNF295-AS1Q8N0V1 137 aa6.46□□□□□ -1.38
PTPN4-206ENST00000441089 TMC1Q8TDI8 760 aa6.46□□□□□ -1.38
PTPN4-206ENST00000441089 RHBDD1Q8TEB9 315 aa6.46□□□□□ -1.38
PTPN4-206ENST00000441089 BRIP1Q9BX63 1249 aa6.46□□□□□ -1.38
PTPN4-206ENST00000441089 BRCA2P51587 3418 aa6.46□□□□□ -1.38
PTPN4-206ENST00000441089 RBBP6Q7Z6E9 1792 aaKnown RBP6.46□□□□□ -1.38
PTPN4-206ENST00000441089 KIF24Q5T7B8 1368 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 NCOR1O75376 2440 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 SCO2A0A1W2PP80 73 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 FAM229AH3BQW9 127 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 TRAF5O00463 557 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 DYRK3O43781 588 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 MAPTP10636 758 aaKnown RBP6.45□□□□□ -1.38
PTPN4-206ENST00000441089 PHKG2P15735 406 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 PCBP4P57723 403 aaKnown RBP6.45□□□□□ -1.38
PTPN4-206ENST00000441089 MCCD1P59942 119 aaPredicted RBP6.45□□□□□ -1.38
PTPN4-206ENST00000441089 TNP2Q05952 138 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 FMR1Q06787 632 aaKnown RBP eCLIP6.45□□□□□ -1.38
PTPN4-206ENST00000441089 COL9A3Q14050 684 aaPredicted RBP6.45□□□□□ -1.38
PTPN4-206ENST00000441089 CCDC93Q567U6 631 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 NARFQ9UHQ1 456 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 ZNF330Q9Y3S2 320 aaPredicted RBP6.45□□□□□ -1.38
PTPN4-206ENST00000441089 PCDHGC4Q9Y5F7 938 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 TJP1Q07157 1748 aa6.45□□□□□ -1.38
PTPN4-206ENST00000441089 A0A1W2PP64 1363 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 FLT4P35916 1363 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 CARMIL3Q8ND23 1372 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 BCORQ6W2J9 1755 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 SCN11AQ9UI33 1791 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 POLR2AP24928 1970 aaKnown RBP6.44□□□□□ -1.38
PTPN4-206ENST00000441089 FZD9O00144 591 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 TRPA1O75762 1119 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 HSP90AB1P08238 724 aaKnown RBP6.44□□□□□ -1.38
PTPN4-206ENST00000441089 FKBP4Q02790 459 aaKnown RBP eCLIP6.44□□□□□ -1.38
PTPN4-206ENST00000441089 STYK1Q6J9G0 422 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 PRPF40BQ6NWY9 871 aaKnown RBP6.44□□□□□ -1.38
PTPN4-206ENST00000441089 JDP2Q8WYK2 163 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 PUS7Q96PZ0 661 aaKnown RBP6.44□□□□□ -1.38
PTPN4-206ENST00000441089 MDFIQ99750 246 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 SNRKQ9NRH2 765 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 HDAC9Q9UKV0 1011 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 USP3Q9Y6I4 520 aa6.44□□□□□ -1.38
PTPN4-206ENST00000441089 NCAPD2Q15021 1401 aa6.43□□□□□ -1.38
PTPN4-206ENST00000441089 PIEZO1Q92508 2521 aa6.43□□□□□ -1.38
PTPN4-206ENST00000441089 ATXN7O15265 892 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms