RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SULF2Q8IWU5 870 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 ARMC10Q8N2F6 343 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 KCNB2Q92953 911 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 NECAB3Q96P71 396 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-208ENST00000423463 TMPRSS13Q9BYE2 586 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 CBX8Q9HC52 389 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 AK5Q9Y6K8 562 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 MAP3K4Q9Y6R4 1608 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 RSPO4Q2I0M5 234 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-208ENST00000423463 GRIN3AQ8TCU5 1115 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 CCDC86Q9H6F5 360 aaKnown RBP3.83□□□□□ -1.8
VPS13A-208ENST00000423463 MRS2Q9HD23 443 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 AP4E1Q9UPM8 1137 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 PLCH2O75038 1416 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 VPS8Q8N3P4 1428 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 ABCA9Q8IUA7 1624 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 CFAP43Q8NDM7 1665 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 GSTP1P09211 210 aaKnown RBP3.82□□□□□ -1.8
VPS13A-208ENST00000423463 LIG1P18858 919 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 ITGB7P26010 798 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 PPP2R3AQ06190 1150 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 CCDC85BQ15834 202 aaPredicted RBP3.82□□□□□ -1.8
VPS13A-208ENST00000423463 MAP3K11Q16584 847 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 RPS26P11Q5JNZ5 115 aaPredicted RBP3.82□□□□□ -1.8
VPS13A-208ENST00000423463 NKAPLQ5M9Q1 402 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 TMC4Q7Z404 712 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 PDZD3Q86UT5 571 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 VTI1BQ9UEU0 232 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 NEO1Q92859 1461 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 PCF11O94913 1555 aaKnown RBP3.82□□□□□ -1.8
VPS13A-208ENST00000423463 SART1O43290 800 aaKnown RBP3.82□□□□□ -1.8
VPS13A-208ENST00000423463 SORBS3O60504 671 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 ERCC3P19447 782 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 SGO2Q562F6 1265 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 MTUS2Q5JR59 1369 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 WDR18Q9BV38 432 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 CEP41Q9BYV8 373 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 SEMA6BQ9H3T3 888 aa3.82□□□□□ -1.8
VPS13A-208ENST00000423463 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.81□□□□□ -1.8
VPS13A-208ENST00000423463 ARAP3Q8WWN8 1544 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 COL17A1Q9UMD9 1497 aaPredicted RBP3.81□□□□□ -1.8
VPS13A-208ENST00000423463 DYRK3O43781 588 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 ADH5P11766 374 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 BMP3P12645 472 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 ZNF16P17020 682 aaPredicted RBP3.81□□□□□ -1.8
VPS13A-208ENST00000423463 AP3B2Q13367 1082 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 EXOSC6Q5RKV6 272 aaKnown RBP3.81□□□□□ -1.8
VPS13A-208ENST00000423463 PCNX4Q63HM2 1172 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 ANKRD34AQ69YU3 496 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 DDX54Q8TDD1 881 aaKnown RBP3.81□□□□□ -1.8
VPS13A-208ENST00000423463 KCNF1Q9H3M0 494 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 CYP4F12Q9HCS2 524 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 RAD18Q9NS91 495 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 PPRC1Q5VV67 1664 aaKnown RBP3.81□□□□□ -1.8
VPS13A-208ENST00000423463 KDM6BO15054 1643 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 AKNAQ7Z591 1439 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 GIPC1O14908 333 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 GAS2O43903 313 aaKnown RBP3.81□□□□□ -1.8
VPS13A-208ENST00000423463 ZNF862O60290 1169 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 TIAF1O95411 115 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 FAM46AQ96IP4 442 aaKnown RBP3.81□□□□□ -1.8
VPS13A-208ENST00000423463 MYRFLQ96LU7 910 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 FAM105AQ9NUU6 356 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 PPM1HQ9ULR3 514 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 TSPOAP1O95153 1857 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 FANCAO15360 1455 aa3.81□□□□□ -1.8
VPS13A-208ENST00000423463 HMX2A2RU54 273 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 K7ELQ4 463 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-208ENST00000423463 AOC2O75106 756 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 RAB6AP20340 208 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 PRR23CQ6ZRP0 262 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-208ENST00000423463 DYMQ7RTS9 669 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 C2CD4AQ8NCU7 369 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-208ENST00000423463 FBLIM1Q8WUP2 373 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 ACSBG1Q96GR2 724 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 SUGCTQ9HAC7 445 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 PPP1R9AQ9ULJ8 1098 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 ACTL7BQ9Y614 415 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 MAP3K1Q13233 1512 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 CCNB3Q8WWL7 1395 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 ADAM23O75077 832 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 RAPGEF3O95398 923 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 NME2P22392 152 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 RXRBP28702 533 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 SOX4Q06945 474 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-208ENST00000423463 PRSS36Q5K4E3 855 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 CDPF1Q6NVV7 123 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 GPBAR1Q8TDU6 330 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 CRELD1Q96HD1 420 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 LGR6Q9HBX8 967 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 TLR6Q9Y2C9 796 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 DENND4BO75064 1496 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-208ENST00000423463 KIF14Q15058 1648 aa3.8□□□□□ -1.8
VPS13A-208ENST00000423463 MEGF11A6BM72 1044 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 BMP6P22004 513 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 PTPN11Q06124 597 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 ZNF252P-AS1Q0IIN9 211 aa3.79□□□□□ -1.8
VPS13A-208ENST00000423463 ZNF326Q5BKZ1 582 aaKnown RBP3.79□□□□□ -1.8
VPS13A-208ENST00000423463 TTBK2Q6IQ55 1244 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 281 ms