RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 BTBD18B2RXH4 712 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 NLRP12P59046 1061 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 PCDHA5Q9Y5H7 936 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 ERLIN1O75477 346 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 PIP4K2BP78356 416 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 FAM107BQ9H098 131 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 ARMT1Q9H993 441 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 ATP2C2O75185 946 aa13.58□□□□□ -0.23
HMGB1-206ENST00000405805 EIF5P55010 431 aaKnown RBP13.58□□□□□ -0.23
HMGB1-206ENST00000405805 MAP3K12Q12852 859 aa13.58□□□□□ -0.23
HMGB1-206ENST00000405805 DNAJC10Q8IXB1 793 aa13.58□□□□□ -0.23
HMGB1-206ENST00000405805 LINC00301Q8NCQ3 95 aa13.58□□□□□ -0.23
HMGB1-206ENST00000405805 PLBD2Q8NHP8 589 aa13.58□□□□□ -0.23
HMGB1-206ENST00000405805 PUS7LQ9H0K6 701 aaKnown RBP13.58□□□□□ -0.23
HMGB1-206ENST00000405805 CCDC70Q6NSX1 233 aa13.58□□□□□ -0.24
HMGB1-206ENST00000405805 DIS3L2Q8IYB7 885 aaKnown RBP13.58□□□□□ -0.24
HMGB1-206ENST00000405805 BTG4Q9NY30 223 aa13.58□□□□□ -0.24
HMGB1-206ENST00000405805 MBD4O95243 580 aa13.58□□□□□ -0.24
HMGB1-206ENST00000405805 ETF1P62495 437 aaKnown RBP13.58□□□□□ -0.24
HMGB1-206ENST00000405805 WTAPQ15007 396 aa13.58□□□□□ -0.24
HMGB1-206ENST00000405805 RTN1Q16799 776 aa13.58□□□□□ -0.24
HMGB1-206ENST00000405805 CAPZA3Q96KX2 299 aa13.58□□□□□ -0.24
HMGB1-206ENST00000405805 BCCIPQ9P287 314 aaKnown RBP eCLIP13.58□□□□□ -0.24
HMGB1-206ENST00000405805 ANGEL1Q9UNK9 670 aaKnown RBP13.58□□□□□ -0.24
HMGB1-206ENST00000405805 SLC4A4Q9Y6R1 1079 aa13.58□□□□□ -0.24
HMGB1-206ENST00000405805 CARMIL3Q8ND23 1372 aa13.58□□□□□ -0.24
HMGB1-206ENST00000405805 TMEM232C9JQI7 657 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 VPS16Q9H269 839 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 ZNF174Q15697 407 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 BRAPQ7Z569 592 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 KIAA1328Q86T90 577 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 IVLP07476 585 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 PPP2R3AQ06190 1150 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 IQCB1Q15051 598 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 SMYD4Q8IYR2 804 aaPredicted RBP13.57□□□□□ -0.24
HMGB1-206ENST00000405805 SLAIN2Q9P270 581 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 SERTAD1Q9UHV2 236 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 NRKQ7Z2Y5 1582 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 SHTN1A0MZ66 631 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 PEX19P40855 299 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 BIRC2Q13490 618 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 ICE2Q659A1 982 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 GUCA1BQ9UMX6 200 aa13.57□□□□□ -0.24
HMGB1-206ENST00000405805 CASP1P29466 404 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 RRAGBQ5VZM2 374 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 SAMD1Q6SPF0 538 aaPredicted RBP13.56□□□□□ -0.24
HMGB1-206ENST00000405805 HOMEZQ8IX15 550 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 SMARCC1Q92922 1105 aaPredicted RBP13.56□□□□□ -0.24
HMGB1-206ENST00000405805 DENND2AQ9ULE3 1009 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 ADGRL3Q9HAR2 1447 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 SSBP05455 408 aaKnown RBP eCLIP13.56□□□□□ -0.24
HMGB1-206ENST00000405805 KRI1Q8N9T8 703 aaKnown RBP13.56□□□□□ -0.24
HMGB1-206ENST00000405805 APPBP2Q92624 585 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 DSCC1Q9BVC3 393 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 FRMD3A2A2Y4 597 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 EXOC5O00471 708 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 TERF2Q15554 542 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 EFCC1Q9HA90 598 aa13.56□□□□□ -0.24
HMGB1-206ENST00000405805 ITSN1Q15811 1721 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 VWA3AA6NCI4 1184 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 ZFYP08048 801 aaPredicted RBP13.55□□□□□ -0.24
HMGB1-206ENST00000405805 ITGA6P23229 1130 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 CLCN6P51797 869 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 MAGEC2Q9UBF1 373 aaPredicted RBP13.55□□□□□ -0.24
HMGB1-206ENST00000405805 FOXN1O15353 648 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 PDE6BP35913 854 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 NLRP5P59047 1200 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 ZMYM1Q5SVZ6 1142 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 DHX40Q8IX18 779 aaKnown RBP13.55□□□□□ -0.24
HMGB1-206ENST00000405805 DPF2Q92785 391 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 ZNF274Q96GC6 653 aaPredicted RBP13.55□□□□□ -0.24
HMGB1-206ENST00000405805 ZNF532Q9HCE3 1301 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 WASF1Q92558 559 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 SLC24A3Q9HC58 644 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 ASAP1Q9ULH1 1129 aa13.55□□□□□ -0.24
HMGB1-206ENST00000405805 IGSF22Q8N9C0 903 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 BLZF1Q9H2G9 400 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 ZHX3Q9H4I2 956 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 DDX41Q9UJV9 622 aaKnown RBP13.54□□□□□ -0.24
HMGB1-206ENST00000405805 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.54□□□□□ -0.24
HMGB1-206ENST00000405805 PCDH11XQ9BZA7 1347 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 PCDH11YQ9BZA8 1340 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 OAS2P29728 719 aaKnown RBP13.54□□□□□ -0.24
HMGB1-206ENST00000405805 NR5A1Q13285 461 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 SCARF1Q14162 830 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 DNAJC21Q5F1R6 531 aaKnown RBP13.54□□□□□ -0.24
HMGB1-206ENST00000405805 TANGO6Q9C0B7 1094 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 RTEL1Q9NZ71 1219 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 UBE2Q2LH0YL09 131 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 CLSTN1O94985 981 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 CTDNEP1O95476 244 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 CCDC175P0C221 793 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 CYP7A1P22680 504 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 TXLNAP40222 546 aa13.54□□□□□ -0.24
HMGB1-206ENST00000405805 IRX2Q9BZI1 471 aaPredicted RBP13.54□□□□□ -0.24
HMGB1-206ENST00000405805 YEATS4O95619 227 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 ARMCX5Q6P1M9 558 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 VPS54Q9P1Q0 977 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 FAM170AA1A519 330 aa13.53□□□□□ -0.24
HMGB1-206ENST00000405805 IRS4O14654 1257 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms