RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MIPOL1Q8TD10 442 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 NAPGQ99747 312 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 RIMBP2O15034 1052 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 FBXO31Q5XUX0 539 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 RAB3GAP1Q15042 981 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 LETM2Q2VYF4 491 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 IFT20Q8IY31 132 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 INTS4Q96HW7 963 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 TRIM6Q9C030 488 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 GPHNQ9NQX3 736 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 TTF2Q9UNY4 1162 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 TNRQ92752 1358 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 IL2RBP14784 551 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 NBPF14Q5TI25 921 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 CCDC62Q6P9F0 684 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 SDCCAG8Q86SQ7 713 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 NSFL1CQ9UNZ2 370 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 HARSP12081 509 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 PDE4DQ08499 809 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 RAB3IPQ96QF0 476 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 DISP3Q9P2K9 1392 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 CLCN1P35523 988 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 TFCP2Q12800 502 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 C8orf74Q6P047 294 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 LMNTD2Q8IXW0 634 aa14.28□□□□□ -0.12
CCDC88C-204ENST00000389857 GBP6Q6ZN66 633 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 ARHGAP24Q8N264 748 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 FANCAO15360 1455 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 TTC36A6NLP5 189 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 DEXIO95424 95 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 LGSNQ5TDP6 509 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 SEPT14Q6ZU15 432 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 GSDMBQ8TAX9 411 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 PLCB1Q9NQ66 1216 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 ZNF174Q15697 407 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 LINS1Q8NG48 757 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 TFCP2L1Q9NZI6 479 aa14.27□□□□□ -0.12
CCDC88C-204ENST00000389857 SLC39A6Q13433 755 aa14.27□□□□□ -0.13
CCDC88C-204ENST00000389857 TOM1O60784 492 aa14.27□□□□□ -0.13
CCDC88C-204ENST00000389857 ZRANB1Q9UGI0 708 aa14.27□□□□□ -0.13
CCDC88C-204ENST00000389857 MAP3K5Q99683 1374 aa14.27□□□□□ -0.13
CCDC88C-204ENST00000389857 NOP56O00567 594 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-204ENST00000389857 MAST3O60307 1309 aa14.27□□□□□ -0.13
CCDC88C-204ENST00000389857 FEZ2Q9UHY8 353 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-204ENST00000389857 HMGB1P1B2RPK0 211 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 I3L4J1 428 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 HOOK2Q96ED9 719 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 CETN3O15182 167 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 TBC1D8BQ0IIM8 1120 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 SOS1Q07889 1333 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 PRIM1P49642 420 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 PLCH2O75038 1416 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 TEX11Q8IYF3 940 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 SYCE1Q8N0S2 351 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 IGSF22Q8N9C0 903 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 GPCPD1Q9NPB8 672 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 OGFRQ9NZT2 677 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 PKD2L1Q9P0L9 805 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 SYNRGQ9UMZ2 1314 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 TMEM87BQ96K49 555 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 NACA2Q9H009 215 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 SAP30BPQ9UHR5 308 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 PA2G4Q9UQ80 394 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 ARHGEF35A5YM69 484 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 USH1CQ9Y6N9 552 aa14.26□□□□□ -0.13
CCDC88C-204ENST00000389857 HPDP32754 393 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 FAM114A2Q9NRY5 505 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 CHMP2AO43633 222 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 FAM160A1Q05DH4 1040 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 RPRD2Q5VT52 1461 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 PCDH11XQ9BZA7 1347 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 PCDH11YQ9BZA8 1340 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 C8orf37Q96NL8 207 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 KDM5BQ9UGL1 1544 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 BIRC2Q13490 618 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 SH2D4BQ5SQS7 431 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 UTP14CQ5TAP6 766 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 MCUR1Q96AQ8 359 aa14.25□□□□□ -0.13
CCDC88C-204ENST00000389857 PCK1P35558 622 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 MAP3K1Q13233 1512 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 BCRP11274 1271 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 ZNF131P52739 623 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 EVCP57679 992 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 NAA25Q14CX7 972 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 GOLGA6CA6NDK9 693 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 GOLGA6BA6NDN3 693 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 MBD4O95243 580 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 GOLGA6DP0CG33 693 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 RXRAP19793 462 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 RUFY4Q6ZNE9 571 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 LLPHQ9BRT6 129 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 GOLGA6AQ9NYA3 693 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 PHLDB2Q86SQ0 1253 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 MAIP1Q8WWC4 291 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 TSKSQ9UJT2 592 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 AFG3L2Q9Y4W6 797 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 M0QZ92 97 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 LPXNO60711 386 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms