RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 ENAMQ9NRM1 1142 aa8.47□□□□□ -1.05
RNU4-39P-201ENST00000362455 PPT2Q9UMR5 302 aa8.47□□□□□ -1.05
RNU4-39P-201ENST00000362455 DNMBPQ6XZF7 1577 aa8.47□□□□□ -1.05
RNU4-39P-201ENST00000362455 CTSBP07858 339 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 ETFBP38117 255 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 NLRP12P59046 1061 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 RPL6Q02878 288 aaKnown RBP8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 SUZ12Q15022 739 aaKnown RBP8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 SOGA3Q5TF21 947 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 ZNF385CQ66K41 422 aaPredicted RBP8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 ILDR2Q71H61 639 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 SVOPQ8N4V2 548 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 WHAMMQ8TF30 809 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 ACSBG1Q96GR2 724 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 SRRTQ9BXP5 876 aaKnown RBP8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 USP26Q9BXU7 913 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 KRT82Q9NSB4 513 aa8.46□□□□□ -1.06
RNU4-39P-201ENST00000362455 SELPP16109 830 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 CDK8P49336 464 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 DGKGP49619 791 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 ZNF165P49910 485 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 CCDC144BQ3MJ40 725 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 MAP4K3Q8IVH8 894 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 CKAP2LQ8IYA6 745 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 ANAPC16Q96DE5 110 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 PCDHA4Q9UN74 947 aa8.45□□□□□ -1.06
RNU4-39P-201ENST00000362455 DDX3YO15523 660 aaKnown RBP8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 ADAM11O75078 769 aa8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 DEAF1O75398 565 aaPredicted RBP8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 HOXB4P17483 251 aaPredicted RBP8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 INSM1Q01101 510 aaPredicted RBP8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 CLCQ05315 142 aa8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 PDE3AQ14432 1141 aa8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 GK5Q6ZS86 529 aa8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 REXO1Q8N1G1 1221 aaKnown RBP8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 NEDD1Q8NHV4 660 aa8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 SHDQ96IW2 340 aa8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 FERD3LQ96RJ6 166 aa8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 POLR3KQ9Y2Y1 108 aaPredicted RBP8.44□□□□□ -1.06
RNU4-39P-201ENST00000362455 LOC100289279A0A1B0GTE1 492 aa8.43□□□□□ -1.06
RNU4-39P-201ENST00000362455 ZNF862O60290 1169 aa8.43□□□□□ -1.06
RNU4-39P-201ENST00000362455 FOXD4L6Q3SYB3 417 aaPredicted RBP8.43□□□□□ -1.06
RNU4-39P-201ENST00000362455 FBXW10Q5XX13 1052 aa8.43□□□□□ -1.06
RNU4-39P-201ENST00000362455 FOXD4L3Q6VB84 417 aaPredicted RBP8.43□□□□□ -1.06
RNU4-39P-201ENST00000362455 ANKS3Q6ZW76 656 aa8.43□□□□□ -1.06
RNU4-39P-201ENST00000362455 ZSCAN1Q8NBB4 408 aa8.43□□□□□ -1.06
RNU4-39P-201ENST00000362455 WDR89Q96FK6 387 aaPredicted RBP8.43□□□□□ -1.06
RNU4-39P-201ENST00000362455 GRIN3BO60391 1043 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 LIG1P18858 919 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 CD68P34810 354 aaPredicted RBP8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 EIF6P56537 245 aaKnown RBP8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 INPP5AQ14642 412 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 WIPI1Q5MNZ9 446 aaPredicted RBP8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 TRAPPC3LQ5T215 181 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 LRFN4Q6PJG9 635 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 PLPPR2Q96GM1 343 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 OSBPL2Q9H1P3 480 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 RRAGCQ9HB90 399 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 KCNK4Q9NYG8 393 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 PRKAG3Q9UGI9 489 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 ZNRF3Q9ULT6 936 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 PCDHB14Q9Y5E9 798 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 SNAPC4Q5SXM2 1469 aa8.42□□□□□ -1.06
RNU4-39P-201ENST00000362455 CLASP1Q7Z460 1538 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 GFRA2O00451 464 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 DLGAP3O95886 979 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 NBPF6Q5VWK0 638 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 DTWD1Q8N5C7 304 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 NBPF4Q96M43 638 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 CRBNQ96SW2 442 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 ZSWIM4Q9H7M6 989 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 EHMT1Q9H9B1 1298 aa8.41□□□□□ -1.06
RNU4-39P-201ENST00000362455 FGD5Q6ZNL6 1462 aa8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 ARHGEF15O94989 841 aa8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 GIPRP48546 466 aa8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 HNRNPUQ00839 825 aaKnown RBP eCLIP8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 KIF4BQ2VIQ3 1234 aa8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 HP1BP3Q5SSJ5 553 aaPredicted RBP8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 GIMAP6Q6P9H5 292 aa8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 FAM169BQ8N8A8 192 aa8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 HNRNPLLQ8WVV9 542 aaKnown RBP8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 PIF1Q9H611 641 aa8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 SNCAIPQ9Y6H5 919 aa8.4□□□□□ -1.06
RNU4-39P-201ENST00000362455 SMAD7O15105 426 aaKnown RBP8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 KLF4O43474 513 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 SMARCA5O60264 1052 aaPredicted RBP8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 ATE1O95260 518 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 IMPDH2P12268 514 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 SERINC3Q13530 473 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 HDXQ7Z353 690 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 NOP9Q86U38 636 aaKnown RBP8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 UBASH3BQ8TF42 649 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 ELMO3Q96BJ8 720 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 TRIM11Q96F44 468 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 WDR18Q9BV38 432 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 CUX1P39880 1505 aa8.39□□□□□ -1.07
RNU4-39P-201ENST00000362455 CHD1O14646 1710 aa8.38□□□□□ -1.07
RNU4-39P-201ENST00000362455 A0A0A0MRY4 1105 aa8.38□□□□□ -1.07
RNU4-39P-201ENST00000362455 DCDC2CA8MYV0 355 aa8.38□□□□□ -1.07
RNU4-39P-201ENST00000362455 AOC2O75106 756 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms