RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 FOXD4L3Q6VB84 417 aaPredicted RBP15.25■□□□□ 0.03
CPNE1-201ENST00000317677 CYB5R4Q7L1T6 521 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 GPT2Q8TD30 523 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 JAG2Q9Y219 1238 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 PRC1O43663 620 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 PRPF40AO75400 957 aaKnown RBP15.25■□□□□ 0.03
CPNE1-201ENST00000317677 MBD3O95983 291 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 F13A1P00488 732 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 PTMAP06454 111 aaKnown RBP15.25■□□□□ 0.03
CPNE1-201ENST00000317677 DYNLL1P63167 89 aaKnown RBP15.25■□□□□ 0.03
CPNE1-201ENST00000317677 NCOA7Q8NI08 942 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 SMARCC2Q8TAQ2 1214 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 TSC1Q92574 1164 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 NSUN4Q96CB9 384 aaKnown RBP15.25■□□□□ 0.03
CPNE1-201ENST00000317677 ANKIB1Q9P2G1 1089 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 LEMD3Q9Y2U8 911 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 SLC4A4Q9Y6R1 1079 aa15.25■□□□□ 0.03
CPNE1-201ENST00000317677 SMIM22K7EJ46 135 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 SLFN14P0C7P3 912 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 PDIA3P30101 505 aaKnown RBP15.24■□□□□ 0.03
CPNE1-201ENST00000317677 CTDSPL2Q05D32 466 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 CHAF1AQ13111 956 aaPredicted RBP15.24■□□□□ 0.03
CPNE1-201ENST00000317677 NSUN7Q8NE18 718 aaKnown RBP15.24■□□□□ 0.03
CPNE1-201ENST00000317677 RBM17Q96I25 401 aaKnown RBP15.24■□□□□ 0.03
CPNE1-201ENST00000317677 NCOA5Q9HCD5 579 aaKnown RBP15.24■□□□□ 0.03
CPNE1-201ENST00000317677 SPDYE4A6NLX3 237 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 TULP2O00295 520 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 PRDX5P30044 214 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 MECOMQ03112 1051 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 C15orf52Q6ZUT6 534 aaKnown RBP15.24■□□□□ 0.03
CPNE1-201ENST00000317677 CDC37L1Q7L3B6 337 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 NLGN2Q8NFZ4 835 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 SDR42E1Q8WUS8 393 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 TSPYL1Q9H0U9 437 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 NAPBQ9H115 298 aa15.24■□□□□ 0.03
CPNE1-201ENST00000317677 NSFL1CQ9UNZ2 370 aaKnown RBP15.24■□□□□ 0.03
CPNE1-201ENST00000317677 MAGEB6P1A0A0J9YX57 407 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 B4E1Z4 1266 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 MMP10P09238 476 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 CCT2P78371 535 aaKnown RBP15.23■□□□□ 0.03
CPNE1-201ENST00000317677 GRIK5Q16478 980 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 TEX2Q8IWB9 1127 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 FAM184AQ8NB25 1140 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 TDRD7Q8NHU6 1098 aaKnown RBP15.23■□□□□ 0.03
CPNE1-201ENST00000317677 ZNF274Q96GC6 653 aaPredicted RBP15.23■□□□□ 0.03
CPNE1-201ENST00000317677 CRAMP1Q96RY5 1269 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 GDPD2Q9HCC8 539 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 HPS5Q9UPZ3 1129 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 DUOX1Q9NRD9 1551 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 WDR19Q8NEZ3 1342 aa15.23■□□□□ 0.03
CPNE1-201ENST00000317677 GNAT2P19087 354 aa15.22■□□□□ 0.03
CPNE1-201ENST00000317677 LARP1BQ659C4 914 aaKnown RBP15.22■□□□□ 0.03
CPNE1-201ENST00000317677 NAA16Q6N069 864 aaPredicted RBP15.22■□□□□ 0.03
CPNE1-201ENST00000317677 CREBRFQ8IUR6 639 aa15.22■□□□□ 0.03
CPNE1-201ENST00000317677 TIGD1Q96MW7 591 aa15.22■□□□□ 0.03
CPNE1-201ENST00000317677 SENP2Q9HC62 589 aa15.22■□□□□ 0.03
CPNE1-201ENST00000317677 TMEM63CQ9P1W3 806 aa15.22■□□□□ 0.03
CPNE1-201ENST00000317677 SALL1Q9NSC2 1324 aa15.22■□□□□ 0.03
CPNE1-201ENST00000317677 RALYLQ86SE5 291 aaKnown RBP15.22■□□□□ 0.03
CPNE1-201ENST00000317677 LAMB1P07942 1786 aa15.21■□□□□ 0.03
CPNE1-201ENST00000317677 VPS37CA5D8V6 355 aaPredicted RBP15.21■□□□□ 0.03
CPNE1-201ENST00000317677 BBOX1O75936 387 aa15.21■□□□□ 0.03
CPNE1-201ENST00000317677 UFL1O94874 794 aa15.21■□□□□ 0.03
CPNE1-201ENST00000317677 U2AF2P26368 475 aaKnown RBP eCLIP15.21■□□□□ 0.038e-57■■■■□ 22.3
CPNE1-201ENST00000317677 PAXIP1Q6ZW49 1069 aaPredicted RBP15.21■□□□□ 0.03
CPNE1-201ENST00000317677 PLCD3Q8N3E9 789 aa15.21■□□□□ 0.03
CPNE1-201ENST00000317677 DDX11Q96FC9 970 aa15.21■□□□□ 0.03
CPNE1-201ENST00000317677 BRIP1Q9BX63 1249 aa15.21■□□□□ 0.03
CPNE1-201ENST00000317677 POLLQ9UGP5 575 aa15.21■□□□□ 0.03
CPNE1-201ENST00000317677 CNPY2Q9Y2B0 182 aa15.21■□□□□ 0.03
CPNE1-201ENST00000317677 MORC2Q9Y6X9 1032 aaPredicted RBP15.21■□□□□ 0.03
CPNE1-201ENST00000317677 SYCE3A1L190 88 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 SH2B2O14492 632 aaPredicted RBP15.2■□□□□ 0.02
CPNE1-201ENST00000317677 GRIN3BO60391 1043 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 TDO2P48775 406 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 RAB11FIP4Q86YS3 637 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 TSPY26PQ9H489 355 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 PARP3Q9Y6F1 533 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 ECM29Q5VYK3 1845 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 KLF18A0A0U1RQI7 1052 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 PTPDC1A2A3K4 754 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 PPFIA3O75145 1194 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 GADD45BO75293 160 aaPredicted RBP15.2■□□□□ 0.02
CPNE1-201ENST00000317677 SRGNP10124 158 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 EVX2Q03828 476 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 AKNAD1Q5T1N1 836 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 OLFM4Q6UX06 510 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 TBC1D16Q8TBP0 767 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 LLPHQ9BRT6 129 aaKnown RBP15.2■□□□□ 0.02
CPNE1-201ENST00000317677 MYH15Q9Y2K3 1946 aa15.2■□□□□ 0.02
CPNE1-201ENST00000317677 ATP2B4P23634 1241 aa15.19■□□□□ 0.02
CPNE1-201ENST00000317677 USP48Q86UV5 1035 aa15.19■□□□□ 0.02
CPNE1-201ENST00000317677 FERMT3Q86UX7 667 aa15.19■□□□□ 0.02
CPNE1-201ENST00000317677 TMEM87AQ8NBN3 555 aa15.19■□□□□ 0.02
CPNE1-201ENST00000317677 IGDCC4Q8TDY8 1250 aa15.19■□□□□ 0.02
CPNE1-201ENST00000317677 STAG1Q8WVM7 1258 aa15.19■□□□□ 0.02
CPNE1-201ENST00000317677 CALCOCO1Q9P1Z2 691 aa15.19■□□□□ 0.02
CPNE1-201ENST00000317677 RBM27Q9P2N5 1060 aaKnown RBP15.19■□□□□ 0.02
CPNE1-201ENST00000317677 DDX41Q9UJV9 622 aaKnown RBP15.19■□□□□ 0.02
CPNE1-201ENST00000317677 GGA1Q9UJY5 639 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms