RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 CCDC196A0A1B0GTZ2 297 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 H7C1D1 291 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 OATP04181 439 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 TUBB4AP04350 444 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 RNASE9P60153 205 aaKnown RBP12.39□□□□□ -0.43
MSH6-201ENST00000234420 AMPD3Q01432 767 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 MAGEB6Q8N7X4 407 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 C6orf50Q9HD87 102 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 PPP1R9AQ9ULJ8 1098 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 VPS8Q8N3P4 1428 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 E2F4Q16254 413 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 UBA7P41226 1012 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 LRPPRCP42704 1394 aaKnown RBP12.39□□□□□ -0.43
MSH6-201ENST00000234420 TBC1D12O60347 775 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 CLTAP09496 248 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 ATP5DP30049 168 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 NFE2L2Q16236 605 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 TMTC4Q5T4D3 741 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 BTG4Q9NY30 223 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 PRPHP41219 470 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 NUDCD3Q8IVD9 361 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 ZCRB1Q8TBF4 217 aaKnown RBP12.38□□□□□ -0.43
MSH6-201ENST00000234420 RNF217Q8TC41 542 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 TNNC1P63316 161 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 CLUL1Q15846 466 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 KANK3Q6NY19 840 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 USP21Q9UK80 565 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 FBLN1P23142 703 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 BIRC3Q13489 604 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 DCPSQ96C86 337 aaKnown RBP12.38□□□□□ -0.43
MSH6-201ENST00000234420 SLC24A3Q9HC58 644 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 MCM9Q9NXL9 1143 aa12.38□□□□□ -0.43
MSH6-201ENST00000234420 TUBBP07437 444 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 CALCOCO2Q13137 446 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 DZIP3Q86Y13 1208 aaKnown RBP12.37□□□□□ -0.43
MSH6-201ENST00000234420 CCDC42Q96M95 316 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 CARD6Q9BX69 1037 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 MAGEB6P1A0A0J9YX57 407 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 METAP2P50579 478 aaKnown RBP eCLIP12.37□□□□□ -0.43
MSH6-201ENST00000234420 USP6NLQ92738 828 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 GPIHBP1Q8IV16 184 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 C17orf53Q8N3J3 647 aaPredicted RBP12.37□□□□□ -0.43
MSH6-201ENST00000234420 DDX17Q92841 729 aaKnown RBP12.37□□□□□ -0.43
MSH6-201ENST00000234420 RIOK1Q9BRS2 568 aaKnown RBP12.37□□□□□ -0.43
MSH6-201ENST00000234420 RAPGEF2Q9Y4G8 1499 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 SYNJ2BP-COX16A0A087WUM0 186 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 E2F5Q15329 346 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 ATP2A3Q93084 1043 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 COX16Q9P0S2 106 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 SLC8A1P32418 973 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 PHEXP78562 749 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 CNPY4Q8N129 248 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 MYRIPQ8NFW9 859 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 MGARPQ8TDB4 240 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 LMBR1Q8WVP7 490 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 UFL1O94874 794 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 LUC7L3O95232 432 aaKnown RBP12.37□□□□□ -0.43
MSH6-201ENST00000234420 APOEP02649 317 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 SNCBQ16143 134 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 HS1BP3Q53T59 392 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 NYXQ9GZU5 481 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 IFNKQ9P0W0 207 aa12.37□□□□□ -0.43
MSH6-201ENST00000234420 SYF2O95926 243 aaKnown RBP12.36□□□□□ -0.43
MSH6-201ENST00000234420 MCM7P33993 719 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 KRT33BQ14525 404 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 SPATS2Q86XZ4 545 aaKnown RBP12.36□□□□□ -0.43
MSH6-201ENST00000234420 KIAA1524Q8TCG1 905 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 RNF41Q9H4P4 317 aaPredicted RBP12.36□□□□□ -0.43
MSH6-201ENST00000234420 ZNF654Q8IZM8 581 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 SLC7A5P2Q9GIP4 190 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 MAGED2Q9UNF1 606 aaPredicted RBP12.36□□□□□ -0.43
MSH6-201ENST00000234420 CSADQ9Y600 493 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 FYCO1Q9BQS8 1478 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 RXRAP19793 462 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 UTP14CQ5TAP6 766 aaKnown RBP12.36□□□□□ -0.43
MSH6-201ENST00000234420 PPP1R16BQ96T49 567 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 ADRA2BP18089 450 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 TRPC3Q13507 836 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 FBXO31Q5XUX0 539 aaPredicted RBP12.36□□□□□ -0.43
MSH6-201ENST00000234420 PHLDB3Q6NSJ2 640 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 NIM1KQ8IY84 436 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 RAB3IPQ96QF0 476 aaPredicted RBP12.36□□□□□ -0.43
MSH6-201ENST00000234420 PALMDQ9NP74 551 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 DACT1Q9NYF0 836 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 CALML3P27482 149 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 SLC8A3P57103 927 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 TMCO5AQ8N6Q1 288 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 ATP6V0A2Q9Y487 856 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 BNIP3LO60238 219 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 NME9Q86XW9 330 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 PHF8Q9UPP1 1060 aa12.36□□□□□ -0.43
MSH6-201ENST00000234420 NCAPG2Q86XI2 1143 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 N4BP2L2Q92802 583 aaPredicted RBP12.35□□□□□ -0.43
MSH6-201ENST00000234420 ARHGAP42A6NI28 874 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 ERMNQ8TAM6 284 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 TSC1Q92574 1164 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 CCNL1Q9UK58 526 aaPredicted RBP12.35□□□□□ -0.43
MSH6-201ENST00000234420 TYRO3Q06418 890 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 BSPRYQ5W0U4 402 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 FNBP1Q96RU3 617 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms