RNA–Protein interactions for RNA: ENST00000562836.5

CDH1-205, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 2,759 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-205ENST00000562836 BCANQ96GW7 911 aa13.14□□□□□ -0.31
CDH1-205ENST00000562836 DCAF8L2P0C7V8 631 aa13.14□□□□□ -0.31
CDH1-205ENST00000562836 IPO4Q8TEX9 1081 aaKnown RBP13.14□□□□□ -0.31
CDH1-205ENST00000562836 SECISBP2LQ93073 1101 aaKnown RBP13.14□□□□□ -0.31
CDH1-205ENST00000562836 NBR1Q14596 966 aa13.13□□□□□ -0.31
CDH1-205ENST00000562836 IGSF3O75054 1194 aa13.12□□□□□ -0.31
CDH1-205ENST00000562836 SUPT5HO00267 1087 aaKnown RBP13.11□□□□□ -0.31
CDH1-205ENST00000562836 GTF2E1P29083 439 aaPredicted RBP13.11□□□□□ -0.31
CDH1-205ENST00000562836 UBTFP17480 764 aaKnown RBP13.1□□□□□ -0.31
CDH1-205ENST00000562836 FOXD1Q16676 465 aa13.09□□□□□ -0.31
CDH1-205ENST00000562836 CNPY4Q8N129 248 aa13.08□□□□□ -0.32
CDH1-205ENST00000562836 PRDM10Q9NQV6 1147 aa13.08□□□□□ -0.32
CDH1-205ENST00000562836 CCDC180Q9P1Z9 1646 aa13.08□□□□□ -0.32
CDH1-205ENST00000562836 FANCIQ9NVI1 1328 aa13.06□□□□□ -0.32
CDH1-205ENST00000562836 TMEM132AQ24JP5 1023 aa13.04□□□□□ -0.32
CDH1-205ENST00000562836 BRPF3Q9ULD4 1205 aa13.04□□□□□ -0.32
CDH1-205ENST00000562836 TEX2Q8IWB9 1127 aa13.02□□□□□ -0.33
CDH1-205ENST00000562836 STAC3Q96MF2 364 aa13.01□□□□□ -0.33
CDH1-205ENST00000562836 CANXP27824 592 aaKnown RBP13□□□□□ -0.33
CDH1-205ENST00000562836 FTSJ3Q8IY81 847 aaKnown RBP13□□□□□ -0.33
CDH1-205ENST00000562836 HSP90AA2PQ14568 343 aaPredicted RBP12.99□□□□□ -0.33
CDH1-205ENST00000562836 KCNG1Q9UIX4 513 aa12.99□□□□□ -0.33
CDH1-205ENST00000562836 DCAF1Q9Y4B6 1507 aa12.98□□□□□ -0.33
CDH1-205ENST00000562836 PLCD3Q8N3E9 789 aa12.98□□□□□ -0.33
CDH1-205ENST00000562836 SHROOM4Q9ULL8 1493 aa12.98□□□□□ -0.33
CDH1-205ENST00000562836 RGS3P49796 1198 aa12.97□□□□□ -0.33
CDH1-205ENST00000562836 CHRM1P11229 460 aaPredicted RBP12.95□□□□□ -0.34
CDH1-205ENST00000562836 NCLP19338 710 aaKnown RBP12.94□□□□□ -0.34
CDH1-205ENST00000562836 WWC1Q8IX03 1113 aa12.94□□□□□ -0.34
CDH1-205ENST00000562836 PRDM4Q9UKN5 801 aa12.94□□□□□ -0.34
CDH1-205ENST00000562836 MIER1Q8N108 512 aa12.94□□□□□ -0.34
CDH1-205ENST00000562836 CCDC9Q9Y3X0 531 aaKnown RBP12.94□□□□□ -0.34
CDH1-205ENST00000562836 RTL5Q5HYW3 569 aaPredicted RBP12.93□□□□□ -0.34
CDH1-205ENST00000562836 CNGB1Q14028 1251 aaPredicted RBP12.91□□□□□ -0.34
CDH1-205ENST00000562836 RNF216Q9NWF9 866 aaPredicted RBP12.91□□□□□ -0.34
CDH1-205ENST00000562836 RRP9O43818 475 aaKnown RBP12.9□□□□□ -0.34
CDH1-205ENST00000562836 TRIM41Q8WV44 630 aa12.9□□□□□ -0.34
CDH1-205ENST00000562836 C11orf95C9JLR9 678 aaPredicted RBP12.89□□□□□ -0.35
CDH1-205ENST00000562836 TMED8Q6PL24 325 aaPredicted RBP12.88□□□□□ -0.35
CDH1-205ENST00000562836 CCER1Q8TC90 406 aaPredicted RBP12.87□□□□□ -0.35
CDH1-205ENST00000562836 USP35Q9P2H5 1018 aa12.86□□□□□ -0.35
CDH1-205ENST00000562836 ZNF592Q92610 1267 aa12.86□□□□□ -0.35
CDH1-205ENST00000562836 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.86□□□□□ -0.35
CDH1-205ENST00000562836 PHF23Q9BUL5 403 aaPredicted RBP12.84□□□□□ -0.35
CDH1-205ENST00000562836 ZNF830Q96NB3 372 aaPredicted RBP12.83□□□□□ -0.36
CDH1-205ENST00000562836 ZCCHC6Q5VYS8 1495 aaKnown RBP12.83□□□□□ -0.36
CDH1-205ENST00000562836 PLCB2Q00722 1185 aa12.83□□□□□ -0.36
CDH1-205ENST00000562836 ITGAEP38570 1179 aa12.81□□□□□ -0.36
CDH1-205ENST00000562836 TICAM2Q86XR7 235 aa12.81□□□□□ -0.36
CDH1-205ENST00000562836 FAM43BQ6ZT52 329 aaPredicted RBP12.79□□□□□ -0.36
CDH1-205ENST00000562836 CALD1Q05682 793 aaKnown RBP12.78□□□□□ -0.36
CDH1-205ENST00000562836 NOP58Q9Y2X3 529 aaKnown RBP12.78□□□□□ -0.36
CDH1-205ENST00000562836 HSP90AA1P07900 732 aaKnown RBP12.76□□□□□ -0.37
CDH1-205ENST00000562836 VGLL3A8MV65 326 aa12.76□□□□□ -0.37
CDH1-205ENST00000562836 FKBP8Q14318 412 aa12.76□□□□□ -0.37
CDH1-205ENST00000562836 PAK3O75914 559 aaPredicted RBP12.75□□□□□ -0.37
CDH1-205ENST00000562836 PATL2C9JE40 543 aaKnown RBP12.74□□□□□ -0.37
CDH1-205ENST00000562836 ZNF316A6NFI3 1004 aaPredicted RBP12.72□□□□□ -0.37
CDH1-205ENST00000562836 WASHC2CQ9Y4E1 1318 aa12.7□□□□□ -0.38
CDH1-205ENST00000562836 FAM43AQ8N2R8 423 aa12.7□□□□□ -0.38
CDH1-205ENST00000562836 FAM193AP78312 1265 aa12.69□□□□□ -0.38
CDH1-205ENST00000562836 RGS22Q8NE09 1264 aa12.68□□□□□ -0.38
CDH1-205ENST00000562836 NEFMP07197 916 aa12.67□□□□□ -0.38
CDH1-205ENST00000562836 MAPK8IP2Q13387 824 aaPredicted RBP12.67□□□□□ -0.38
CDH1-205ENST00000562836 TMEM51Q9NW97 253 aa12.67□□□□□ -0.38
CDH1-205ENST00000562836 ARID4BQ4LE39 1312 aaPredicted RBP12.66□□□□□ -0.38
CDH1-205ENST00000562836 PPM1GO15355 546 aaPredicted RBP12.65□□□□□ -0.38
CDH1-205ENST00000562836 WASHC2AQ641Q2 1341 aa12.65□□□□□ -0.38
CDH1-205ENST00000562836 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.63□□□□□ -0.39
CDH1-205ENST00000562836 ZNF526Q8TF50 670 aaPredicted RBP12.63□□□□□ -0.39
CDH1-205ENST00000562836 PLCD4Q9BRC7 762 aa12.63□□□□□ -0.39
CDH1-205ENST00000562836 SOX12O15370 315 aa12.63□□□□□ -0.39
CDH1-205ENST00000562836 GRIPAP1Q4V328 841 aa12.61□□□□□ -0.39
CDH1-205ENST00000562836 CLSTN1O94985 981 aa12.6□□□□□ -0.39
CDH1-205ENST00000562836 SLC52A1Q9NWF4 448 aa12.6□□□□□ -0.39
CDH1-205ENST00000562836 MYCNP04198 464 aaPredicted RBP12.58□□□□□ -0.39
CDH1-205ENST00000562836 HMGB1P09429 215 aaKnown RBP12.58□□□□□ -0.4
CDH1-205ENST00000562836 ZHX1Q9UKY1 873 aaPredicted RBP12.58□□□□□ -0.4
CDH1-205ENST00000562836 PUS7Q96PZ0 661 aaKnown RBP12.58□□□□□ -0.4
CDH1-205ENST00000562836 PRDM16Q9HAZ2 1276 aa12.58□□□□□ -0.4
CDH1-205ENST00000562836 HDAC5Q9UQL6 1122 aa12.57□□□□□ -0.4
CDH1-205ENST00000562836 IRX3P78415 501 aaPredicted RBP12.57□□□□□ -0.4
CDH1-205ENST00000562836 PTMAP06454 111 aaKnown RBP12.56□□□□□ -0.4
CDH1-205ENST00000562836 OS9Q13438 667 aaPredicted RBP12.55□□□□□ -0.4
CDH1-205ENST00000562836 PSMD1Q99460 953 aa12.55□□□□□ -0.4
CDH1-205ENST00000562836 SLC4A1APQ9BWU0 796 aaKnown RBP12.55□□□□□ -0.4
CDH1-205ENST00000562836 CERS3Q8IU89 383 aa12.54□□□□□ -0.4
CDH1-205ENST00000562836 CENPJQ9HC77 1338 aaPredicted RBP12.53□□□□□ -0.4
CDH1-205ENST00000562836 APPP05067 770 aa12.53□□□□□ -0.4
CDH1-205ENST00000562836 CLGNO14967 610 aa12.52□□□□□ -0.4
CDH1-205ENST00000562836 E9PSI1 815 aa12.52□□□□□ -0.41
CDH1-205ENST00000562836 CWC22Q9HCG8 908 aaKnown RBP12.51□□□□□ -0.41
CDH1-205ENST00000562836 PDCL3Q9H2J4 239 aa12.51□□□□□ -0.41
CDH1-205ENST00000562836 PTMSP20962 102 aa12.49□□□□□ -0.41
CDH1-205ENST00000562836 RRAGDQ9NQL2 400 aaPredicted RBP12.47□□□□□ -0.41
CDH1-205ENST00000562836 MCCP23508 829 aa12.47□□□□□ -0.41
CDH1-205ENST00000562836 GSE1Q14687 1217 aa12.46□□□□□ -0.41
CDH1-205ENST00000562836 MMP14P50281 582 aa12.46□□□□□ -0.42
CDH1-205ENST00000562836 ZNF692Q9BU19 519 aaPredicted RBP12.46□□□□□ -0.42
CDH1-205ENST00000562836 DDRGK1Q96HY6 314 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms