RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 CHMP4AQ9BY43 222 aa5.01□□□□□ -1.61
SYNE1-207ENST00000367255 C11orf95C9JLR9 678 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-207ENST00000367255 PDIA4P13667 645 aaKnown RBP5.01□□□□□ -1.61
SYNE1-207ENST00000367255 CALRP27797 417 aaKnown RBP5.01□□□□□ -1.61
SYNE1-207ENST00000367255 SLC4A1APQ9BWU0 796 aaKnown RBP5.01□□□□□ -1.61
SYNE1-207ENST00000367255 TAF3Q5VWG9 929 aa5□□□□□ -1.61
SYNE1-207ENST00000367255 UPF2Q9HAU5 1272 aaKnown RBP5□□□□□ -1.61
SYNE1-207ENST00000367255 CSRNP3Q8WYN3 585 aa4.99□□□□□ -1.61
SYNE1-207ENST00000367255 STAC3Q96MF2 364 aa4.99□□□□□ -1.61
SYNE1-207ENST00000367255 PNNQ9H307 717 aaKnown RBP4.99□□□□□ -1.61
SYNE1-207ENST00000367255 PPM1GO15355 546 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-207ENST00000367255 RSPH6AQ9H0K4 717 aa4.99□□□□□ -1.61
SYNE1-207ENST00000367255 BCL11BQ9C0K0 894 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-207ENST00000367255 MAP7D2Q96T17 732 aa4.98□□□□□ -1.61
SYNE1-207ENST00000367255 DDX10Q13206 875 aaKnown RBP4.98□□□□□ -1.61
SYNE1-207ENST00000367255 HMGB1P1B2RPK0 211 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-207ENST00000367255 KTN1Q86UP2 1357 aaKnown RBP4.96□□□□□ -1.61
SYNE1-207ENST00000367255 CHMP4CQ96CF2 233 aa4.96□□□□□ -1.62
SYNE1-207ENST00000367255 GOLGA6L22H0YM25 854 aa4.96□□□□□ -1.62
SYNE1-207ENST00000367255 MS4A1P11836 297 aa4.96□□□□□ -1.62
SYNE1-207ENST00000367255 NRDCO43847 1150 aa4.96□□□□□ -1.62
SYNE1-207ENST00000367255 ARID3CA6NKF2 412 aa4.95□□□□□ -1.62
SYNE1-207ENST00000367255 BECN1Q14457 450 aa4.95□□□□□ -1.62
SYNE1-207ENST00000367255 AKNAQ7Z591 1439 aa4.95□□□□□ -1.62
SYNE1-207ENST00000367255 PHLDB1Q86UU1 1377 aa4.95□□□□□ -1.62
SYNE1-207ENST00000367255 GOLGA6L3A6NEY3 463 aa4.94□□□□□ -1.62
SYNE1-207ENST00000367255 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-207ENST00000367255 ANP32CO43423 234 aa4.93□□□□□ -1.62
SYNE1-207ENST00000367255 L1TD1Q5T7N2 865 aaKnown RBP4.93□□□□□ -1.62
SYNE1-207ENST00000367255 CCER2I3L3R5 266 aa4.93□□□□□ -1.62
SYNE1-207ENST00000367255 CDCA8Q53HL2 280 aa4.93□□□□□ -1.62
SYNE1-207ENST00000367255 TRIM52Q96A61 297 aa4.92□□□□□ -1.62
SYNE1-207ENST00000367255 CEP162Q5TB80 1403 aa4.91□□□□□ -1.62
SYNE1-207ENST00000367255 WWC1Q8IX03 1113 aa4.91□□□□□ -1.62
SYNE1-207ENST00000367255 KCNH8Q96L42 1107 aa4.91□□□□□ -1.62
SYNE1-207ENST00000367255 SPRYD3Q8NCJ5 442 aa4.91□□□□□ -1.62
SYNE1-207ENST00000367255 ROCK2O75116 1388 aaKnown RBP4.91□□□□□ -1.62
SYNE1-207ENST00000367255 GOLGA3Q08378 1498 aa4.91□□□□□ -1.62
SYNE1-207ENST00000367255 P3H3Q8IVL6 736 aa4.9□□□□□ -1.62
SYNE1-207ENST00000367255 TSPYL1Q9H0U9 437 aa4.9□□□□□ -1.63
SYNE1-207ENST00000367255 CLIP1P30622 1438 aa4.9□□□□□ -1.63
SYNE1-207ENST00000367255 PDE3BQ13370 1112 aa4.89□□□□□ -1.63
SYNE1-207ENST00000367255 NAP1L5Q96NT1 182 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-207ENST00000367255 CAVIN1Q6NZI2 390 aaKnown RBP4.89□□□□□ -1.63
SYNE1-207ENST00000367255 WRNQ14191 1432 aaPredicted RBP eCLIP4.89□□□□□ -1.63
SYNE1-207ENST00000367255 CREBRFQ8IUR6 639 aa4.88□□□□□ -1.63
SYNE1-207ENST00000367255 FAM9BQ8IZU0 186 aa4.88□□□□□ -1.63
SYNE1-207ENST00000367255 FANCIQ9NVI1 1328 aa4.88□□□□□ -1.63
SYNE1-207ENST00000367255 ZNF526Q8TF50 670 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-207ENST00000367255 RSF1Q96T23 1441 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-207ENST00000367255 GOLGA6L6A8MZA4 724 aa4.88□□□□□ -1.63
SYNE1-207ENST00000367255 SUPT16HQ9Y5B9 1047 aaKnown RBP4.88□□□□□ -1.63
SYNE1-207ENST00000367255 ZBTB47Q9UFB7 747 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-207ENST00000367255 DEKP35659 375 aaKnown RBP4.87□□□□□ -1.63
SYNE1-207ENST00000367255 PLPPR3Q6T4P5 718 aa4.87□□□□□ -1.63
SYNE1-207ENST00000367255 FAM193AP78312 1265 aa4.87□□□□□ -1.63
SYNE1-207ENST00000367255 HOXA7P31268 230 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-207ENST00000367255 SLC4A3P48751 1232 aa4.86□□□□□ -1.63
SYNE1-207ENST00000367255 ZCCHC6Q5VYS8 1495 aaKnown RBP4.86□□□□□ -1.63
SYNE1-207ENST00000367255 PAXIP1Q6ZW49 1069 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-207ENST00000367255 PHF14O94880 888 aa4.86□□□□□ -1.63
SYNE1-207ENST00000367255 KIF16BQ96L93 1317 aa4.85□□□□□ -1.63
SYNE1-207ENST00000367255 NOP58Q9Y2X3 529 aaKnown RBP4.85□□□□□ -1.63
SYNE1-207ENST00000367255 WASHC2AQ641Q2 1341 aa4.85□□□□□ -1.63
SYNE1-207ENST00000367255 WASHC2CQ9Y4E1 1318 aa4.85□□□□□ -1.63
SYNE1-207ENST00000367255 FAM50AQ14320 339 aaKnown RBP4.85□□□□□ -1.63
SYNE1-207ENST00000367255 CHAF1AQ13111 956 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-207ENST00000367255 SKOR2Q2VWA4 1001 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-207ENST00000367255 ROCK1Q13464 1354 aa4.85□□□□□ -1.63
SYNE1-207ENST00000367255 CCDC180Q9P1Z9 1646 aa4.85□□□□□ -1.63
SYNE1-207ENST00000367255 CNPY4Q8N129 248 aa4.84□□□□□ -1.63
SYNE1-207ENST00000367255 TULP1O00294 542 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-207ENST00000367255 FHAD1B1AJZ9 1412 aa4.84□□□□□ -1.64
SYNE1-207ENST00000367255 AEBP1Q8IUX7 1158 aa4.84□□□□□ -1.64
SYNE1-207ENST00000367255 HDAC5Q9UQL6 1122 aa4.84□□□□□ -1.64
SYNE1-207ENST00000367255 CCDC34Q96HJ3 373 aa4.83□□□□□ -1.64
SYNE1-207ENST00000367255 GOLGA6L1Q8N7Z2 621 aa4.83□□□□□ -1.64
SYNE1-207ENST00000367255 TUBB4BP68371 445 aa4.83□□□□□ -1.64
SYNE1-207ENST00000367255 TNIKQ9UKE5 1360 aa4.83□□□□□ -1.64
SYNE1-207ENST00000367255 CCDC144AA2RUR9 1427 aa4.82□□□□□ -1.64
SYNE1-207ENST00000367255 TUBB4AP04350 444 aa4.82□□□□□ -1.64
SYNE1-207ENST00000367255 SCAPERQ9BY12 1400 aa4.82□□□□□ -1.64
SYNE1-207ENST00000367255 SH3BGRP55822 239 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-207ENST00000367255 TAOK2Q9UL54 1235 aa4.82□□□□□ -1.64
SYNE1-207ENST00000367255 CSPP1Q1MSJ5 1256 aa4.82□□□□□ -1.64
SYNE1-207ENST00000367255 NAP1L2Q9ULW6 460 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-207ENST00000367255 TPM3P06753 285 aa4.82□□□□□ -1.64
SYNE1-207ENST00000367255 HMGN5P82970 282 aaKnown RBP4.82□□□□□ -1.64
SYNE1-207ENST00000367255 EIF3AQ14152 1382 aaKnown RBP4.82□□□□□ -1.64
SYNE1-207ENST00000367255 NINLQ9Y2I6 1382 aa4.81□□□□□ -1.64
SYNE1-207ENST00000367255 EIF3DO15371 548 aaKnown RBP eCLIP4.81□□□□□ -1.64
SYNE1-207ENST00000367255 ZMYM3Q14202 1370 aa4.81□□□□□ -1.64
SYNE1-207ENST00000367255 B4GALNT3Q6L9W6 998 aa4.81□□□□□ -1.64
SYNE1-207ENST00000367255 INSRP06213 1382 aa4.81□□□□□ -1.64
SYNE1-207ENST00000367255 CASC1Q6TDU7 716 aa4.81□□□□□ -1.64
SYNE1-207ENST00000367255 SYAP1Q96A49 352 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-207ENST00000367255 ATAD2Q6PL18 1390 aa4.8□□□□□ -1.64
SYNE1-207ENST00000367255 HTATSF1O43719 755 aaKnown RBP4.8□□□□□ -1.64
SYNE1-207ENST00000367255 TCERG1O14776 1098 aaKnown RBP4.8□□□□□ -1.64
SYNE1-207ENST00000367255 U2SURPO15042 1029 aaKnown RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms