RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 TIMELESSQ9UNS1 1208 aa7.88□□□□□ -1.15
VPS13D-201ENST00000011700 BAZ1AQ9NRL2 1556 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-201ENST00000011700 FHAD1B1AJZ9 1412 aa7.87□□□□□ -1.15
VPS13D-201ENST00000011700 CFAP53Q96M91 514 aa7.87□□□□□ -1.15
VPS13D-201ENST00000011700 CSRNP3Q8WYN3 585 aa7.87□□□□□ -1.15
VPS13D-201ENST00000011700 ZNF326Q5BKZ1 582 aaKnown RBP7.87□□□□□ -1.15
VPS13D-201ENST00000011700 BCANQ96GW7 911 aa7.87□□□□□ -1.15
VPS13D-201ENST00000011700 EIF4G2P78344 907 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS13D-201ENST00000011700 HNRNPUQ00839 825 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS13D-201ENST00000011700 GOLGA3Q08378 1498 aa7.86□□□□□ -1.15
VPS13D-201ENST00000011700 STAG3Q9UJ98 1225 aa7.85□□□□□ -1.15
VPS13D-201ENST00000011700 TSPY4P0CV99 314 aa7.84□□□□□ -1.15
VPS13D-201ENST00000011700 TSPY10P0CW01 314 aa7.84□□□□□ -1.15
VPS13D-201ENST00000011700 CHMP4CQ96CF2 233 aa7.84□□□□□ -1.15
VPS13D-201ENST00000011700 PPARGC1BQ86YN6 1023 aaKnown RBP7.84□□□□□ -1.15
VPS13D-201ENST00000011700 HDAC5Q9UQL6 1122 aa7.84□□□□□ -1.16
VPS13D-201ENST00000011700 MTUS2Q5JR59 1369 aa7.84□□□□□ -1.16
VPS13D-201ENST00000011700 LOC105371045A0A1W2PR82 267 aa7.83□□□□□ -1.16
VPS13D-201ENST00000011700 HTATSF1O43719 755 aaKnown RBP7.83□□□□□ -1.16
VPS13D-201ENST00000011700 PTMAP06454 111 aaKnown RBP7.83□□□□□ -1.16
VPS13D-201ENST00000011700 SYAP1Q96A49 352 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-201ENST00000011700 CEP164Q9UPV0 1460 aa7.82□□□□□ -1.16
VPS13D-201ENST00000011700 DNTTIP2Q5QJE6 756 aaKnown RBP7.82□□□□□ -1.16
VPS13D-201ENST00000011700 MCCP23508 829 aa7.81□□□□□ -1.16
VPS13D-201ENST00000011700 KIAA2012Q0VF49 1180 aa7.81□□□□□ -1.16
VPS13D-201ENST00000011700 FKBP8Q14318 412 aa7.81□□□□□ -1.16
VPS13D-201ENST00000011700 AEBP2Q6ZN18 517 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-201ENST00000011700 PHLDB1Q86UU1 1377 aa7.8□□□□□ -1.16
VPS13D-201ENST00000011700 MSNP26038 577 aaKnown RBP7.79□□□□□ -1.16
VPS13D-201ENST00000011700 FTSJ3Q8IY81 847 aaKnown RBP7.79□□□□□ -1.16
VPS13D-201ENST00000011700 PHF14O94880 888 aa7.79□□□□□ -1.16
VPS13D-201ENST00000011700 CALD1Q05682 793 aaKnown RBP7.79□□□□□ -1.16
VPS13D-201ENST00000011700 CLIP1P30622 1438 aa7.79□□□□□ -1.16
VPS13D-201ENST00000011700 CSPP1Q1MSJ5 1256 aa7.78□□□□□ -1.16
VPS13D-201ENST00000011700 CNGB1Q14028 1251 aaPredicted RBP7.77□□□□□ -1.16
VPS13D-201ENST00000011700 NUDCQ9Y266 331 aa7.77□□□□□ -1.16
VPS13D-201ENST00000011700 KNSTRNQ9Y448 316 aa7.77□□□□□ -1.17
VPS13D-201ENST00000011700 MRS2Q9HD23 443 aa7.77□□□□□ -1.17
VPS13D-201ENST00000011700 GOLGA6L1Q8N7Z2 621 aa7.77□□□□□ -1.17
VPS13D-201ENST00000011700 HDGFP51858 240 aaKnown RBP7.76□□□□□ -1.17
VPS13D-201ENST00000011700 ABCC9O60706 1549 aa7.76□□□□□ -1.17
VPS13D-201ENST00000011700 FOXD1Q16676 465 aa7.75□□□□□ -1.17
VPS13D-201ENST00000011700 KIF27Q86VH2 1401 aa7.75□□□□□ -1.17
VPS13D-201ENST00000011700 KIF3AQ9Y496 699 aa7.74□□□□□ -1.17
VPS13D-201ENST00000011700 TPM4P67936 248 aa7.74□□□□□ -1.17
VPS13D-201ENST00000011700 GOLGA6L4A6NEF3 574 aa7.74□□□□□ -1.17
VPS13D-201ENST00000011700 GBP4Q96PP9 640 aa7.74□□□□□ -1.17
VPS13D-201ENST00000011700 EIF3AQ14152 1382 aaKnown RBP7.74□□□□□ -1.17
VPS13D-201ENST00000011700 KANK1Q14678 1352 aa7.74□□□□□ -1.17
VPS13D-201ENST00000011700 HSCBQ8IWL3 235 aa7.72□□□□□ -1.17
VPS13D-201ENST00000011700 SMARCA2P51531 1590 aa7.72□□□□□ -1.17
VPS13D-201ENST00000011700 ROCK2O75116 1388 aaKnown RBP7.72□□□□□ -1.17
VPS13D-201ENST00000011700 SETQ01105 290 aaPredicted RBP7.71□□□□□ -1.17
VPS13D-201ENST00000011700 MAPK8IP3Q9UPT6 1336 aa7.71□□□□□ -1.17
VPS13D-201ENST00000011700 WWC1Q8IX03 1113 aa7.71□□□□□ -1.18
VPS13D-201ENST00000011700 LAS1LQ9Y4W2 734 aaKnown RBP7.71□□□□□ -1.18
VPS13D-201ENST00000011700 IPO8O15397 1037 aaKnown RBP7.71□□□□□ -1.18
VPS13D-201ENST00000011700 PPP4R2Q9NY27 417 aa7.71□□□□□ -1.18
VPS13D-201ENST00000011700 RTN4Q9NQC3 1192 aaKnown RBP7.71□□□□□ -1.18
VPS13D-201ENST00000011700 A0A0U1RQG5 324 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-201ENST00000011700 FBLN2P98095 1184 aa7.7□□□□□ -1.18
VPS13D-201ENST00000011700 CALRP27797 417 aaKnown RBP7.7□□□□□ -1.18
VPS13D-201ENST00000011700 FAM9BQ8IZU0 186 aa7.7□□□□□ -1.18
VPS13D-201ENST00000011700 HMGB2P26583 209 aaKnown RBP7.69□□□□□ -1.18
VPS13D-201ENST00000011700 PRKCSHP14314 528 aaPredicted RBP7.69□□□□□ -1.18
VPS13D-201ENST00000011700 NGEFQ8N5V2 710 aa7.69□□□□□ -1.18
VPS13D-201ENST00000011700 NOP58Q9Y2X3 529 aaKnown RBP7.69□□□□□ -1.18
VPS13D-201ENST00000011700 BAZ1BQ9UIG0 1483 aaKnown RBP7.69□□□□□ -1.18
VPS13D-201ENST00000011700 CCER2I3L3R5 266 aa7.68□□□□□ -1.18
VPS13D-201ENST00000011700 GPS2Q13227 327 aa7.68□□□□□ -1.18
VPS13D-201ENST00000011700 NBR1Q14596 966 aa7.68□□□□□ -1.18
VPS13D-201ENST00000011700 FGD1P98174 961 aa7.68□□□□□ -1.18
VPS13D-201ENST00000011700 MTERF4Q7Z6M4 381 aaKnown RBP7.68□□□□□ -1.18
VPS13D-201ENST00000011700 ATP6V1DQ9Y5K8 247 aa7.68□□□□□ -1.18
VPS13D-201ENST00000011700 GPATCH3Q96I76 525 aa7.67□□□□□ -1.18
VPS13D-201ENST00000011700 GOLGA6L3A6NEY3 463 aa7.67□□□□□ -1.18
VPS13D-201ENST00000011700 HSP90AB1P08238 724 aaKnown RBP7.67□□□□□ -1.18
VPS13D-201ENST00000011700 GOLGA2Q08379 1002 aa7.67□□□□□ -1.18
VPS13D-201ENST00000011700 ZNF777Q9ULD5 760 aaPredicted RBP7.67□□□□□ -1.18
VPS13D-201ENST00000011700 CCDC70Q6NSX1 233 aa7.67□□□□□ -1.18
VPS13D-201ENST00000011700 DHX8Q14562 1220 aaKnown RBP7.67□□□□□ -1.18
VPS13D-201ENST00000011700 MYO15BQ96JP2 1530 aa7.66□□□□□ -1.18
VPS13D-201ENST00000011700 NAP1L5Q96NT1 182 aaPredicted RBP7.66□□□□□ -1.18
VPS13D-201ENST00000011700 AAMPQ13685 434 aa7.66□□□□□ -1.18
VPS13D-201ENST00000011700 LRRFIP1Q32MZ4 808 aaKnown RBP7.65□□□□□ -1.18
VPS13D-201ENST00000011700 KIAA1211Q6ZU35 1233 aa7.65□□□□□ -1.18
VPS13D-201ENST00000011700 TNIKQ9UKE5 1360 aa7.65□□□□□ -1.18
VPS13D-201ENST00000011700 NOC3LQ8WTT2 800 aaKnown RBP7.65□□□□□ -1.18
VPS13D-201ENST00000011700 DDX10Q13206 875 aaKnown RBP7.65□□□□□ -1.19
VPS13D-201ENST00000011700 ARHGAP35Q9NRY4 1499 aa7.64□□□□□ -1.19
VPS13D-201ENST00000011700 FMN1Q68DA7 1419 aa7.64□□□□□ -1.19
VPS13D-201ENST00000011700 PPP1R15AO75807 674 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-201ENST00000011700 TNNT3P45378 269 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-201ENST00000011700 KCNJ4P48050 445 aa7.64□□□□□ -1.19
VPS13D-201ENST00000011700 WRNQ14191 1432 aaPredicted RBP eCLIP7.64□□□□□ -1.19
VPS13D-201ENST00000011700 PLEKHD1A6NEE1 506 aa7.63□□□□□ -1.19
VPS13D-201ENST00000011700 RSPH6AQ9H0K4 717 aa7.63□□□□□ -1.19
VPS13D-201ENST00000011700 SKOR2Q2VWA4 1001 aaPredicted RBP7.63□□□□□ -1.19
VPS13D-201ENST00000011700 UACAQ9BZF9 1416 aa7.63□□□□□ -1.19
VPS13D-201ENST00000011700 TPM3P06753 285 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms