RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 NFE4Q86UQ8 179 aa10.3□□□□□ -0.76
GGA3-220ENST00000613421 PRR9Q5T870 116 aa10.3□□□□□ -0.76
GGA3-220ENST00000613421 CITED1Q99966 193 aa10.3□□□□□ -0.76
GGA3-220ENST00000613421 TM2D2Q9BX73 214 aa10.3□□□□□ -0.76
GGA3-220ENST00000613421 CRYBA4P53673 196 aa10.3□□□□□ -0.76
GGA3-220ENST00000613421 G3V4G9 280 aa10.3□□□□□ -0.76
GGA3-220ENST00000613421 M0QY20 66 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 NRACQ8N912 160 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 A0A0J9YXY3 114 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 TRBV10-2A0A0K0K1G8 114 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 B5MCH6 92 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 MIAQ16674 131 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 DSCAML1Q8TD84 2053 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 IGHV3-30P01768 117 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 IGHV3-33P01772 117 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 IGHV3-30-5P0DP03 117 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 CAMK2N2Q96S95 79 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 TMEM126AQ9H061 195 aa10.29□□□□□ -0.76
GGA3-220ENST00000613421 MRPS12O15235 138 aaKnown RBP10.28□□□□□ -0.76
GGA3-220ENST00000613421 CLEC2BQ92478 149 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 DEFB4AO15263 64 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 WFDC11Q8NEX6 87 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 Q9HAA7 133 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 IGLV4-3A0A075B6K6 122 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 RNASE3P12724 160 aaKnown RBP10.28□□□□□ -0.76
GGA3-220ENST00000613421 MIR7-3HGQ8N6C7 128 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 MAPKAPK5-AS1Q8N8E1 139 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 LINC00467Q9BRT7 94 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 INSL3P51460 131 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 PRO0255Q9UI72 69 aa10.28□□□□□ -0.76
GGA3-220ENST00000613421 ZNF22P17026 224 aaPredicted RBP10.27□□□□□ -0.76
GGA3-220ENST00000613421 H3BT86 120 aa10.27□□□□□ -0.77
GGA3-220ENST00000613421 CCDC168Q8NDH2 2452 aa10.27□□□□□ -0.77
GGA3-220ENST00000613421 IGLV1-40P01703 118 aa10.27□□□□□ -0.77
GGA3-220ENST00000613421 Q6ZSV7 163 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 A0A0B4J2C4 111 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 TRBV27A0A0K0K1C4 114 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 TMEM223A0PJW6 202 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 TCL1BO95988 128 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 CXCL5P42830 114 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 Q6ZS46 218 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 CNFNQ9BYD5 112 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 ZMAT4Q9H898 229 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 ZNF702PQ9H963 129 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 KLLNB2CW77 178 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 CDK2AP2O75956 126 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 PTH2Q96A98 100 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 PSMG3-AS1Q96PY0 264 aa10.26□□□□□ -0.77
GGA3-220ENST00000613421 IGHV4-4A0A075B6R2 117 aa10.25□□□□□ -0.77
GGA3-220ENST00000613421 RS1O15537 224 aa10.25□□□□□ -0.77
GGA3-220ENST00000613421 CFAP126Q5VTH2 177 aa10.25□□□□□ -0.77
GGA3-220ENST00000613421 TRBV6-5A0A0K0K1A5 114 aa10.25□□□□□ -0.77
GGA3-220ENST00000613421 GAS8-AS1O95177 125 aa10.25□□□□□ -0.77
GGA3-220ENST00000613421 MRAPQ8TCY5 172 aa10.25□□□□□ -0.77
GGA3-220ENST00000613421 SONP18583 2426 aaKnown RBP10.25□□□□□ -0.77
GGA3-220ENST00000613421 C2orf91Q6ZV80 131 aa10.24□□□□□ -0.77
GGA3-220ENST00000613421 CDKN2A-AS1Q9UH64 79 aa10.24□□□□□ -0.77
GGA3-220ENST00000613421 COL4A2P08572 1712 aa10.24□□□□□ -0.77
GGA3-220ENST00000613421 RBMY1FQ15415 496 aaKnown RBP10.24□□□□□ -0.77
GGA3-220ENST00000613421 SPANXB1Q9NS25 103 aaPredicted RBP10.24□□□□□ -0.77
GGA3-220ENST00000613421 URB1-AS1Q96HZ7 61 aa10.23□□□□□ -0.77
GGA3-220ENST00000613421 TRAV26-1A0A087WT03 109 aa10.23□□□□□ -0.77
GGA3-220ENST00000613421 SPAG11BQ08648 103 aa10.23□□□□□ -0.77
GGA3-220ENST00000613421 LECT2O14960 151 aa10.23□□□□□ -0.77
GGA3-220ENST00000613421 HIVEP3Q5T1R4 2406 aa10.23□□□□□ -0.77
GGA3-220ENST00000613421 NDUFA1O15239 70 aa10.23□□□□□ -0.77
GGA3-220ENST00000613421 Q8N976 141 aa10.22□□□□□ -0.77
GGA3-220ENST00000613421 PROK1P58294 105 aa10.22□□□□□ -0.77
GGA3-220ENST00000613421 DCANP1Q8TF63 244 aa10.22□□□□□ -0.77
GGA3-220ENST00000613421 DNAH12Q6ZR08 3092 aa10.22□□□□□ -0.77
GGA3-220ENST00000613421 KLK12Q9UKR0 248 aa10.22□□□□□ -0.77
GGA3-220ENST00000613421 RPL18AQ02543 176 aaKnown RBP10.22□□□□□ -0.77
GGA3-220ENST00000613421 NCR3O14931 201 aa10.21□□□□□ -0.77
GGA3-220ENST00000613421 SORL1Q92673 2214 aa10.21□□□□□ -0.77
GGA3-220ENST00000613421 ZNF843Q8N446 348 aa10.21□□□□□ -0.77
GGA3-220ENST00000613421 SMIM20Q8N5G0 67 aa10.21□□□□□ -0.78
GGA3-220ENST00000613421 C2CD3Q4AC94 2353 aa10.21□□□□□ -0.78
GGA3-220ENST00000613421 F8W735 103 aaPredicted RBP10.2□□□□□ -0.78
GGA3-220ENST00000613421 C9orf85Q96MD7 179 aa10.2□□□□□ -0.78
GGA3-220ENST00000613421 TSHBP01222 138 aa10.2□□□□□ -0.78
GGA3-220ENST00000613421 PYGO1Q9Y3Y4 419 aa10.2□□□□□ -0.78
GGA3-220ENST00000613421 MYO9AB2RTY4 2548 aa10.2□□□□□ -0.78
GGA3-220ENST00000613421 POLR2KP53803 58 aaKnown RBP10.2□□□□□ -0.78
GGA3-220ENST00000613421 CEP295Q9C0D2 2601 aa10.2□□□□□ -0.78
GGA3-220ENST00000613421 CCL18P55774 89 aa10.2□□□□□ -0.78
GGA3-220ENST00000613421 DEFB105AQ8NG35 78 aa10.19□□□□□ -0.78
GGA3-220ENST00000613421 H7C423 109 aa10.19□□□□□ -0.78
GGA3-220ENST00000613421 AVPP01185 164 aa10.19□□□□□ -0.78
GGA3-220ENST00000613421 TRACP01848 142 aa10.19□□□□□ -0.78
GGA3-220ENST00000613421 SPANXCQ9NY87 97 aa10.19□□□□□ -0.78
GGA3-220ENST00000613421 RAI1Q7Z5J4 1906 aaPredicted RBP10.18□□□□□ -0.78
GGA3-220ENST00000613421 A0A1W2PPR1 153 aa10.18□□□□□ -0.78
GGA3-220ENST00000613421 CRYGDP07320 174 aa10.18□□□□□ -0.78
GGA3-220ENST00000613421 FAM222AQ5U5X8 452 aa10.18□□□□□ -0.78
GGA3-220ENST00000613421 C18orf65Q6ZTR6 163 aa10.18□□□□□ -0.78
GGA3-220ENST00000613421 SMIM9A6NGZ8 99 aa10.18□□□□□ -0.78
GGA3-220ENST00000613421 ETDCA0A1B0GVM5 59 aa10.18□□□□□ -0.78
GGA3-220ENST00000613421 HIST2H2BDQ6DRA6 164 aa10.18□□□□□ -0.78
GGA3-220ENST00000613421 CRIP2P52943 208 aaPredicted RBP10.18□□□□□ -0.78
GGA3-220ENST00000613421 TIRAPP58753 221 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms