RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 RBMY1FQ15415 496 aaKnown RBP8.48□□□□□ -1.05
VRK3-223ENST00000601341 PHLDA1Q8WV24 401 aaPredicted RBP8.48□□□□□ -1.05
VRK3-223ENST00000601341 A0A1B0GWB2 263 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 K7ERU9 68 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 M0QY20 66 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 CRYGDP07320 174 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 KRTAP10-11P60412 298 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 HERVK_113P61574 105 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 OCIAD2Q56VL3 154 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 SAMD5Q5TGI4 173 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 MAPKAPK5-AS1Q8N8E1 139 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 LINC01587Q99440 93 aa8.48□□□□□ -1.05
VRK3-223ENST00000601341 PKD1L1Q8TDX9 2849 aa8.47□□□□□ -1.05
VRK3-223ENST00000601341 G3V4G9 280 aa8.47□□□□□ -1.05
VRK3-223ENST00000601341 GIG44P09565 113 aaPredicted RBP8.47□□□□□ -1.05
VRK3-223ENST00000601341 TCTAP57738 103 aa8.47□□□□□ -1.05
VRK3-223ENST00000601341 LINC00467Q9BRT7 94 aa8.47□□□□□ -1.05
VRK3-223ENST00000601341 TTTY13Q9BZ97 58 aa8.47□□□□□ -1.05
VRK3-223ENST00000601341 TP53TG1Q9Y2A0 90 aa8.47□□□□□ -1.05
VRK3-223ENST00000601341 TRBV7-3A0A075B6L6 115 aa8.46□□□□□ -1.05
VRK3-223ENST00000601341 F5H697 171 aa8.46□□□□□ -1.05
VRK3-223ENST00000601341 MDFICQ9P1T7 246 aa8.46□□□□□ -1.05
VRK3-223ENST00000601341 SPCS1Q9Y6A9 102 aa8.46□□□□□ -1.05
VRK3-223ENST00000601341 TMEM238LA0A1B0GVL6 79 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 C11orf86A6NJI1 115 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 A6NJY4 79 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 SPRY2O43597 315 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 HTN1P15515 57 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 CRYBA4P53673 196 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 ZNF876PQ49A33 203 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 C1orf158Q8N1D5 194 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 KIR2DL5BQ8NHK3 375 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 HIST1H4GQ99525 98 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 IGLV4-69A0A075B6H9 119 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 A0A087WWL8 130 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 TSHBP01222 138 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 APOC4P55056 127 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 CSNK1G2-AS1Q8NCQ2 148 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 PRADC1Q9BSG0 188 aa8.45□□□□□ -1.06
VRK3-223ENST00000601341 IGHV3OR16-12A0A075B7B8 117 aa8.44□□□□□ -1.06
VRK3-223ENST00000601341 I3L3M4 83 aa8.44□□□□□ -1.06
VRK3-223ENST00000601341 IGHV4-30-4P0DP06 118 aa8.44□□□□□ -1.06
VRK3-223ENST00000601341 NFE4Q86UQ8 179 aa8.44□□□□□ -1.06
VRK3-223ENST00000601341 JPT2Q9H910 190 aa8.44□□□□□ -1.06
VRK3-223ENST00000601341 NHP2Q9NX24 153 aaKnown RBP8.44□□□□□ -1.06
VRK3-223ENST00000601341 ZNF56Q15929 161 aa8.43□□□□□ -1.06
VRK3-223ENST00000601341 C12orf74Q32Q52 190 aa8.43□□□□□ -1.06
VRK3-223ENST00000601341 NEGR1Q7Z3B1 354 aa8.43□□□□□ -1.06
VRK3-223ENST00000601341 RAB37Q96AX2 223 aa8.43□□□□□ -1.06
VRK3-223ENST00000601341 A8MWV9 139 aa8.43□□□□□ -1.06
VRK3-223ENST00000601341 SPANXB1Q9NS25 103 aaPredicted RBP8.43□□□□□ -1.06
VRK3-223ENST00000601341 PYGO1Q9Y3Y4 419 aa8.43□□□□□ -1.06
VRK3-223ENST00000601341 CMYA5Q8N3K9 4069 aa8.42□□□□□ -1.06
VRK3-223ENST00000601341 ZNF815PA8K554 130 aa8.42□□□□□ -1.06
VRK3-223ENST00000601341 A8MZ25 164 aa8.42□□□□□ -1.06
VRK3-223ENST00000601341 ZNF415Q09FC8 603 aa8.42□□□□□ -1.06
VRK3-223ENST00000601341 FAM74A4Q5TZK3 123 aa8.42□□□□□ -1.06
VRK3-223ENST00000601341 C20orf203Q8NBC4 194 aa8.42□□□□□ -1.06
VRK3-223ENST00000601341 IGLL5B9A064 214 aa8.41□□□□□ -1.06
VRK3-223ENST00000601341 M0R2P5 195 aa8.41□□□□□ -1.06
VRK3-223ENST00000601341 RHODO00212 210 aa8.4□□□□□ -1.06
VRK3-223ENST00000601341 PRM2P04554 102 aa8.4□□□□□ -1.06
VRK3-223ENST00000601341 TMEM263Q8WUH6 116 aaKnown RBP8.4□□□□□ -1.06
VRK3-223ENST00000601341 ZNF479Q96JC4 524 aa8.4□□□□□ -1.06
VRK3-223ENST00000601341 SPXQ9BT56 116 aa8.4□□□□□ -1.06
VRK3-223ENST00000601341 MGAM2Q2M2H8 2515 aa8.4□□□□□ -1.06
VRK3-223ENST00000601341 F8W1H4 67 aa8.4□□□□□ -1.07
VRK3-223ENST00000601341 AZU1P20160 251 aa8.4□□□□□ -1.07
VRK3-223ENST00000601341 RPL39P62891 51 aaKnown RBP8.4□□□□□ -1.07
VRK3-223ENST00000601341 RRN3P1Q2M238 152 aa8.4□□□□□ -1.07
VRK3-223ENST00000601341 SCGB1D4Q6XE38 83 aa8.4□□□□□ -1.07
VRK3-223ENST00000601341 C11orf72Q8NBR9 251 aa8.4□□□□□ -1.07
VRK3-223ENST00000601341 UBE2D1P51668 147 aa8.39□□□□□ -1.07
VRK3-223ENST00000601341 KPRPQ5T749 579 aaPredicted RBP8.39□□□□□ -1.07
VRK3-223ENST00000601341 DNAJC30Q96LL9 226 aa8.39□□□□□ -1.07
VRK3-223ENST00000601341 NOTCH1P46531 2555 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 K7ERJ3 54 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 P0DMU3 169 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 FAM231AP0DMU4 169 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 FAM231CP0DMU5 169 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 C16orf74Q96GX8 76 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 A0A0J9YY99 117 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 SMIM9A6NGZ8 99 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 DEFB135Q30KP9 77 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 LYRM7Q5U5X0 104 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 SLC25A29Q8N8R3 303 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 ZNRF2Q8NHG8 242 aa8.38□□□□□ -1.07
VRK3-223ENST00000601341 NAA38Q9BRA0 125 aaKnown RBP8.38□□□□□ -1.07
VRK3-223ENST00000601341 LEPROTO15243 131 aa8.37□□□□□ -1.07
VRK3-223ENST00000601341 SRSF9Q13242 221 aaKnown RBP eCLIP8.37□□□□□ -1.07
VRK3-223ENST00000601341 TMEM170BQ5T4T1 132 aa8.37□□□□□ -1.07
VRK3-223ENST00000601341 AMELXQ99217 191 aa8.37□□□□□ -1.07
VRK3-223ENST00000601341 DNHD1Q96M86 4753 aa8.37□□□□□ -1.07
VRK3-223ENST00000601341 NBEAL1Q6ZS30 2694 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 IGLV4-3A0A075B6K6 122 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 TMEM223A0PJW6 202 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 J3QQQ9 107 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 DAZ2Q13117 558 aaKnown RBP8.36□□□□□ -1.07
VRK3-223ENST00000601341 IL17DQ8TAD2 202 aa8.36□□□□□ -1.07
VRK3-223ENST00000601341 PLEKHB2Q96CS7 222 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms