RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 VPS25Q9BRG1 176 aa12.59□□□□□ -0.39
SHKBP1-224ENST00000600718 TP53TG1Q9Y2A0 90 aa12.59□□□□□ -0.39
SHKBP1-224ENST00000600718 LYRM9A8MSI8 78 aa12.58□□□□□ -0.4
SHKBP1-224ENST00000600718 AMMECR1LQ6DCA0 310 aa12.58□□□□□ -0.4
SHKBP1-224ENST00000600718 TNFRSF18Q9Y5U5 241 aa12.58□□□□□ -0.4
SHKBP1-224ENST00000600718 IGHV4-28A0A0C4DH34 117 aa12.58□□□□□ -0.4
SHKBP1-224ENST00000600718 C18orf15Q96N68 181 aa12.58□□□□□ -0.4
SHKBP1-224ENST00000600718 KIR2DL4Q99706 377 aa12.58□□□□□ -0.4
SHKBP1-224ENST00000600718 K7ERU9 68 aa12.57□□□□□ -0.4
SHKBP1-224ENST00000600718 P0DMU3 169 aa12.57□□□□□ -0.4
SHKBP1-224ENST00000600718 FAM231AP0DMU4 169 aa12.57□□□□□ -0.4
SHKBP1-224ENST00000600718 FAM231CP0DMU5 169 aa12.57□□□□□ -0.4
SHKBP1-224ENST00000600718 COX8AP10176 69 aa12.57□□□□□ -0.4
SHKBP1-224ENST00000600718 KPRPQ5T749 579 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-224ENST00000600718 Q8NAQ8 132 aa12.57□□□□□ -0.4
SHKBP1-224ENST00000600718 TMEM238LA0A1B0GVL6 79 aa12.56□□□□□ -0.4
SHKBP1-224ENST00000600718 SEC11AP67812 179 aa12.56□□□□□ -0.4
SHKBP1-224ENST00000600718 NEGR1Q7Z3B1 354 aa12.56□□□□□ -0.4
SHKBP1-224ENST00000600718 ERASQ7Z444 233 aa12.56□□□□□ -0.4
SHKBP1-224ENST00000600718 NEXN-AS1Q8NBZ9 246 aa12.56□□□□□ -0.4
SHKBP1-224ENST00000600718 TRBV10-1A0A0K0K1A3 114 aa12.55□□□□□ -0.4
SHKBP1-224ENST00000600718 I3L3M4 83 aa12.55□□□□□ -0.4
SHKBP1-224ENST00000600718 DEFB130BP0DP73 79 aa12.55□□□□□ -0.4
SHKBP1-224ENST00000600718 DEFB130AP0DP74 79 aa12.55□□□□□ -0.4
SHKBP1-224ENST00000600718 FAM222AQ5U5X8 452 aa12.55□□□□□ -0.4
SHKBP1-224ENST00000600718 NACAE9PAV3 2078 aa12.55□□□□□ -0.4
SHKBP1-224ENST00000600718 DKK2Q9UBU2 259 aa12.54□□□□□ -0.4
SHKBP1-224ENST00000600718 K7EQD1 137 aa12.54□□□□□ -0.4
SHKBP1-224ENST00000600718 RIPPLY3P57055 190 aa12.54□□□□□ -0.4
SHKBP1-224ENST00000600718 TRAV8-6A0A0B4J262 113 aa12.53□□□□□ -0.4
SHKBP1-224ENST00000600718 TRGV4A0A0C4DH28 118 aa12.53□□□□□ -0.4
SHKBP1-224ENST00000600718 C2orf91Q6ZV80 131 aa12.53□□□□□ -0.4
SHKBP1-224ENST00000600718 Q9UF83 564 aa12.53□□□□□ -0.4
SHKBP1-224ENST00000600718 TRBV6-4A0A1B0GX49 114 aa12.52□□□□□ -0.4
SHKBP1-224ENST00000600718 DEFB4AO15263 64 aa12.52□□□□□ -0.4
SHKBP1-224ENST00000600718 FHL2Q14192 279 aa12.52□□□□□ -0.4
SHKBP1-224ENST00000600718 SLC25A29Q8N8R3 303 aa12.52□□□□□ -0.4
SHKBP1-224ENST00000600718 RHOHQ15669 191 aa12.52□□□□□ -0.41
SHKBP1-224ENST00000600718 TOMM6Q96B49 74 aa12.52□□□□□ -0.41
SHKBP1-224ENST00000600718 IFI27L1Q96BM0 104 aa12.52□□□□□ -0.41
SHKBP1-224ENST00000600718 CMYA5Q8N3K9 4069 aa12.52□□□□□ -0.41
SHKBP1-224ENST00000600718 LINC01549A6NIU2 74 aa12.51□□□□□ -0.41
SHKBP1-224ENST00000600718 TSHBP01222 138 aa12.51□□□□□ -0.41
SHKBP1-224ENST00000600718 TMEM97Q5BJF2 176 aa12.51□□□□□ -0.41
SHKBP1-224ENST00000600718 TRBV7-3A0A075B6L6 115 aa12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 ATP5LO75964 103 aa12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 SPART-AS1P0CW21 52 aa12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 RPL36AP83881 106 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 RPL36ALQ969Q0 106 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 ANK2Q01484 3957 aa12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 K7EIL1 84 aa12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 C2orf66Q6UXQ4 117 aa12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 GTF2H5Q6ZYL4 71 aa12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 ZNRF2Q8NHG8 242 aa12.5□□□□□ -0.41
SHKBP1-224ENST00000600718 GAGE10A6NGK3 116 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 H3BRM9 83 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 PRB2P02812 416 aaPredicted RBP12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 TEX48A0A1B0GUV7 120 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 A6NDN8 102 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 H0Y8G0 127 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 DAD1P61803 113 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 DEFB104AQ8WTQ1 72 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 PRADC1Q9BSG0 188 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 RETNQ9HD89 108 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 CYSLTR1Q9Y271 337 aa12.49□□□□□ -0.41
SHKBP1-224ENST00000600718 PKD1L1Q8TDX9 2849 aa12.48□□□□□ -0.41
SHKBP1-224ENST00000600718 FGF6P10767 208 aa12.48□□□□□ -0.41
SHKBP1-224ENST00000600718 SCGB3A1Q96QR1 104 aa12.48□□□□□ -0.41
SHKBP1-224ENST00000600718 C9orf118A6NHY6 69 aa12.47□□□□□ -0.41
SHKBP1-224ENST00000600718 HHLA3Q9XRX5 114 aa12.47□□□□□ -0.41
SHKBP1-224ENST00000600718 SIVA1O15304 175 aa12.47□□□□□ -0.41
SHKBP1-224ENST00000600718 DEFB121Q5J5C9 76 aa12.47□□□□□ -0.41
SHKBP1-224ENST00000600718 LGALS9CQ6DKI2 356 aa12.47□□□□□ -0.41
SHKBP1-224ENST00000600718 CELA1Q9UNI1 258 aa12.47□□□□□ -0.41
SHKBP1-224ENST00000600718 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-224ENST00000600718 UBE2D3P61077 147 aa12.46□□□□□ -0.41
SHKBP1-224ENST00000600718 UBE2D2P62837 147 aa12.46□□□□□ -0.41
SHKBP1-224ENST00000600718 DAZ4Q86SG3 579 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-224ENST00000600718 SBSPONQ8IVN8 264 aa12.46□□□□□ -0.41
SHKBP1-224ENST00000600718 DAZ3Q9NR90 486 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-224ENST00000600718 GAGE12JA6NER3 117 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 GAGE4Q13068 117 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 GAGE5Q13069 117 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 GAGE13Q4V321 117 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 BOD1L2Q8IYS8 172 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 PHLDA1Q8WV24 401 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 PRSS1P07477 247 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 HSD52Q0P140 79 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 C20orf203Q8NBC4 194 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 C11orf68Q9H3H3 251 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 PRO0255Q9UI72 69 aa12.45□□□□□ -0.42
SHKBP1-224ENST00000600718 IGHV3-38A0A0C4DH36 116 aa12.44□□□□□ -0.42
SHKBP1-224ENST00000600718 K7EP34 96 aa12.44□□□□□ -0.42
SHKBP1-224ENST00000600718 CRYBA4P53673 196 aa12.44□□□□□ -0.42
SHKBP1-224ENST00000600718 ATP5G1P05496 136 aa12.43□□□□□ -0.42
SHKBP1-224ENST00000600718 ZMAT4Q9H898 229 aa12.43□□□□□ -0.42
SHKBP1-224ENST00000600718 RPL39P62891 51 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-224ENST00000600718 TMEM141Q96I45 108 aa12.43□□□□□ -0.42
SHKBP1-224ENST00000600718 SPATA25Q9BR10 227 aa12.43□□□□□ -0.42
SHKBP1-224ENST00000600718 LOC100131303A0A0U1RQF7 123 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 186.8 ms