RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	KRTAP4-5	Q9BYR2	181 aa		5.8	□□□□□ -1.48
SSBP4-208	ENST00000600628	COX11	Q9Y6N1	276 aa		5.8	□□□□□ -1.48
SSBP4-208	ENST00000600628	URGCP-MRPS24	S4R325	110 aa		5.8	□□□□□ -1.48
SSBP4-208	ENST00000600628	TRBV25-1	A0A075B6N4	114 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628		A0A087WX48	190 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	TRAV26-2	A0A0B4J265	109 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	RAB4A	P20338	218 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	POLR2K	P53803	58 aa	Known RBP	5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	RBX1	P62877	108 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	ELOB	Q15370	118 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628		Q8N814	137 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	C15orf54	Q8N8G6	183 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	C20orf203	Q8NBC4	194 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	RPL39L	Q96EH5	51 aa	Known RBP	5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	KLK12	Q9UKR0	248 aa		5.79	□□□□□ -1.48
SSBP4-208	ENST00000600628	IGHV1-24	A0A0C4DH33	117 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628		A0A1B0GXF2	115 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628	GCSH	P23434	173 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628	XG	P55808	180 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628	KRTAP10-1	P60331	282 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628		Q0VG73	95 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628	ADIRF	Q15847	76 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628		Q8N1X5	172 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628		Q8N976	141 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628	CLRN3	Q8NCR9	226 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628	NAT8B	Q9UHF3	227 aa		5.78	□□□□□ -1.48
SSBP4-208	ENST00000600628	TRBV27	A0A0K0K1C4	114 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	LOC105371267	A0A1B0GV96	52 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	SDHAF1	A6NFY7	115 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	TMEM262	E9PQX1	116 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	NCR2	O95944	276 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	ESD	P10768	282 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	RPS10	P46783	165 aa	Known RBP	5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	MIA	Q16674	131 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	KCNIP4	Q6PIL6	250 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628		Q6ZSA8	131 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	NRAC	Q8N912	160 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	CHCHD5	Q9BSY4	110 aa		5.77	□□□□□ -1.49
SSBP4-208	ENST00000600628	IGLV4-60	A0A075B6I1	120 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	TRBV24-1	A0A075B6N3	115 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	IGLV5-52	A0A0A0MRZ9	124 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628		A0A1B0GW15	77 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	FAM104B	Q5XKR9	115 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	SMIM15	Q7Z3B0	74 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	AMN1	Q8IY45	258 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	UBE2W	Q96B02	151 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	RMI2	Q96E14	147 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	MRAP2	Q96G30	205 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	TMEM243	Q9BU79	118 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	TMEM70	Q9BUB7	260 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	SMCO4	Q9NRQ5	59 aa		5.76	□□□□□ -1.49
SSBP4-208	ENST00000600628	MYCBP2	O75592	4640 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628		H7C423	109 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	TSHB	P01222	138 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	ANG	P03950	147 aa	Known RBP	5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	RPL32	P62910	135 aa	Known RBP	5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	PNRC1	Q12796	327 aa	Predicted RBP	5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	GAGE6	Q13070	117 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	RIG	Q13278	110 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	COTL1	Q14019	142 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	RHEB	Q15382	184 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	MRPL51	Q4U2R6	128 aa	Known RBP	5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	LINC00269	Q8N2A0	174 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	BAALC	Q8WXS3	180 aa		5.75	□□□□□ -1.49
SSBP4-208	ENST00000600628	IGKV2D-24	A0A075B6R9	120 aa		5.74	□□□□□ -1.49
SSBP4-208	ENST00000600628		I3L3M4	83 aa		5.74	□□□□□ -1.49
SSBP4-208	ENST00000600628	ADCYAP1	P18509	176 aa		5.74	□□□□□ -1.49
SSBP4-208	ENST00000600628	ATP5L2	Q7Z4Y8	100 aa		5.74	□□□□□ -1.49
SSBP4-208	ENST00000600628	BORCS7	Q96B45	105 aa		5.74	□□□□□ -1.49
SSBP4-208	ENST00000600628	C1orf43	Q9BWL3	253 aa		5.74	□□□□□ -1.49
SSBP4-208	ENST00000600628	PKHD1L1	Q86WI1	4243 aa		5.73	□□□□□ -1.49
SSBP4-208	ENST00000600628	TRAV8-4	A0A0B4J246	113 aa		5.73	□□□□□ -1.49
SSBP4-208	ENST00000600628	LECT2	O14960	151 aa		5.73	□□□□□ -1.49
SSBP4-208	ENST00000600628	AMT	P48728	403 aa		5.73	□□□□□ -1.49
SSBP4-208	ENST00000600628	REG3A	Q06141	175 aa		5.73	□□□□□ -1.49
SSBP4-208	ENST00000600628	MRPL52	Q86TS9	123 aa	Known RBP	5.73	□□□□□ -1.49
SSBP4-208	ENST00000600628	ST20	Q9HBF5	79 aa		5.73	□□□□□ -1.49
SSBP4-208	ENST00000600628	FAM30A	Q9NZY2	134 aa		5.73	□□□□□ -1.49
SSBP4-208	ENST00000600628	PPP1R2P9	O14990	202 aa		5.72	□□□□□ -1.49
SSBP4-208	ENST00000600628	PPP1R17	O96001	155 aa		5.72	□□□□□ -1.49
SSBP4-208	ENST00000600628	CRP	P02741	224 aa		5.72	□□□□□ -1.49
SSBP4-208	ENST00000600628	ZNF25	P17030	456 aa	Predicted RBP	5.72	□□□□□ -1.49
SSBP4-208	ENST00000600628	SUMO2	P61956	95 aa	Known RBP	5.72	□□□□□ -1.49
SSBP4-208	ENST00000600628	DEFB104A	Q8WTQ1	72 aa		5.72	□□□□□ -1.49
SSBP4-208	ENST00000600628	C20orf78	Q9BR46	151 aa		5.72	□□□□□ -1.49
SSBP4-208	ENST00000600628	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	PRSS47	A8MTI9	375 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	EPM2A	B3EWF7	344 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	SMKR1	H3BMG3	65 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	PHOX2A	O14813	284 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	APCS	P02743	223 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	MT-ND4L	P03901	98 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	PRSS1	P07477	247 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	FGF6	P10767	208 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	HBB	P68871	147 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	FAM104A	Q969W3	186 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	ANAPC16	Q96DE5	110 aa		5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	CSDC2	Q9Y534	153 aa	Known RBP	5.71	□□□□□ -1.5
SSBP4-208	ENST00000600628	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	IGKV2-29	A2NJV5	120 aa	Predicted RBP	5.7	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms