RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PYGO1Q9Y3Y4 419 aa14.21□□□□□ -0.13
CLIP3-206ENST00000593074 SETXQ7Z333 2677 aaKnown RBP14.21□□□□□ -0.14
CLIP3-206ENST00000593074 IGLV4-3A0A075B6K6 122 aa14.21□□□□□ -0.14
CLIP3-206ENST00000593074 K7EP13 123 aa14.21□□□□□ -0.14
CLIP3-206ENST00000593074 CRLF1O75462 422 aa14.21□□□□□ -0.14
CLIP3-206ENST00000593074 GIG44P09565 113 aaPredicted RBP14.21□□□□□ -0.14
CLIP3-206ENST00000593074 AMMECR1LQ6DCA0 310 aa14.21□□□□□ -0.14
CLIP3-206ENST00000593074 TMEM263Q8WUH6 116 aaKnown RBP14.2□□□□□ -0.14
CLIP3-206ENST00000593074 NIPBLQ6KC79 2804 aaeCLIP14.19□□□□□ -0.14
CLIP3-206ENST00000593074 LINC00482Q8N8I6 264 aa14.19□□□□□ -0.14
CLIP3-206ENST00000593074 WFDC10AQ9H1F0 79 aa14.19□□□□□ -0.14
CLIP3-206ENST00000593074 TRBV7-3A0A075B6L6 115 aa14.18□□□□□ -0.14
CLIP3-206ENST00000593074 ZNF815PA8K554 130 aa14.18□□□□□ -0.14
CLIP3-206ENST00000593074 SMIM13P0DJ93 91 aa14.17□□□□□ -0.14
CLIP3-206ENST00000593074 TMEM170BQ5T4T1 132 aa14.17□□□□□ -0.14
CLIP3-206ENST00000593074 FAM104AQ969W3 186 aa14.17□□□□□ -0.14
CLIP3-206ENST00000593074 CHCHD7Q9BUK0 85 aa14.17□□□□□ -0.14
CLIP3-206ENST00000593074 TRGV1A0A0A0MS02 117 aa14.16□□□□□ -0.14
CLIP3-206ENST00000593074 CRYBA4P53673 196 aa14.16□□□□□ -0.14
CLIP3-206ENST00000593074 OR4C5Q8NGB2 326 aa14.16□□□□□ -0.14
CLIP3-206ENST00000593074 HIST1H4GQ99525 98 aa14.16□□□□□ -0.14
CLIP3-206ENST00000593074 H3BUT2 72 aa14.16□□□□□ -0.14
CLIP3-206ENST00000593074 AMELXQ99217 191 aa14.16□□□□□ -0.14
CLIP3-206ENST00000593074 VCX2Q9H322 139 aa14.16□□□□□ -0.14
CLIP3-206ENST00000593074 PHLDA1Q8WV24 401 aaPredicted RBP14.15□□□□□ -0.14
CLIP3-206ENST00000593074 RAB37Q96AX2 223 aa14.15□□□□□ -0.14
CLIP3-206ENST00000593074 RPL35AP18077 110 aaKnown RBP14.14□□□□□ -0.15
CLIP3-206ENST00000593074 DAZ2Q13117 558 aaKnown RBP14.14□□□□□ -0.15
CLIP3-206ENST00000593074 Q6ZTI0 123 aa14.14□□□□□ -0.15
CLIP3-206ENST00000593074 SPANXA1Q9NS26 97 aa14.14□□□□□ -0.15
CLIP3-206ENST00000593074 FN1P02751 2386 aaKnown RBP14.14□□□□□ -0.15
CLIP3-206ENST00000593074 TSPEAR-AS2P59090 65 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 C1QTNF4Q9BXJ3 329 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 NHP2Q9NX24 153 aaKnown RBP14.13□□□□□ -0.15
CLIP3-206ENST00000593074 TRAV4A0A0B4J268 109 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 COTL1Q14019 142 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 CSNK1G2-AS1Q8NCQ2 148 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 PLEKHB2Q96CS7 222 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 C16orf74Q96GX8 76 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 ZNF479Q96JC4 524 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 UBE2D4Q9Y2X8 147 aa14.13□□□□□ -0.15
CLIP3-206ENST00000593074 NSD1Q96L73 2696 aaPredicted RBP14.13□□□□□ -0.15
CLIP3-206ENST00000593074 TMEM223A0PJW6 202 aa14.12□□□□□ -0.15
CLIP3-206ENST00000593074 PLAC8L1A1L4L8 177 aa14.12□□□□□ -0.15
CLIP3-206ENST00000593074 K7ERJ3 54 aa14.12□□□□□ -0.15
CLIP3-206ENST00000593074 ZNF22P17026 224 aaPredicted RBP14.12□□□□□ -0.15
CLIP3-206ENST00000593074 JMJD1CQ15652 2540 aa14.12□□□□□ -0.15
CLIP3-206ENST00000593074 HIVEP1P15822 2718 aa14.12□□□□□ -0.15
CLIP3-206ENST00000593074 SCGB1D4Q6XE38 83 aa14.11□□□□□ -0.15
CLIP3-206ENST00000593074 NAA38Q9BRA0 125 aaKnown RBP14.11□□□□□ -0.15
CLIP3-206ENST00000593074 C2CD3Q4AC94 2353 aa14.11□□□□□ -0.15
CLIP3-206ENST00000593074 A0A0J9YXV3 536 aa14.11□□□□□ -0.15
CLIP3-206ENST00000593074 A0A1W2PPM0 123 aa14.11□□□□□ -0.15
CLIP3-206ENST00000593074 CEMP1Q6PRD7 247 aaPredicted RBP14.11□□□□□ -0.15
CLIP3-206ENST00000593074 IGHV3-38A0A0C4DH36 116 aa14.1□□□□□ -0.15
CLIP3-206ENST00000593074 TRBV10-1A0A0K0K1A3 114 aa14.1□□□□□ -0.15
CLIP3-206ENST00000593074 MRPS36P82909 103 aaKnown RBP14.1□□□□□ -0.15
CLIP3-206ENST00000593074 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.1□□□□□ -0.15
CLIP3-206ENST00000593074 J3QQQ9 107 aa14.1□□□□□ -0.15
CLIP3-206ENST00000593074 K7EQD1 137 aa14.1□□□□□ -0.15
CLIP3-206ENST00000593074 INSL3P51460 131 aa14.1□□□□□ -0.15
CLIP3-206ENST00000593074 NOP10Q9NPE3 64 aaKnown RBP14.1□□□□□ -0.15
CLIP3-206ENST00000593074 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.09□□□□□ -0.15
CLIP3-206ENST00000593074 A0A1B0GWB2 263 aa14.09□□□□□ -0.15
CLIP3-206ENST00000593074 IGKV2-29A2NJV5 120 aaPredicted RBP14.09□□□□□ -0.15
CLIP3-206ENST00000593074 GAGE10A6NGK3 116 aa14.09□□□□□ -0.15
CLIP3-206ENST00000593074 GTF2H5Q6ZYL4 71 aa14.09□□□□□ -0.15
CLIP3-206ENST00000593074 A0A0J9YY99 117 aa14.08□□□□□ -0.15
CLIP3-206ENST00000593074 K7EP34 96 aa14.08□□□□□ -0.15
CLIP3-206ENST00000593074 LEPROTO15243 131 aa14.08□□□□□ -0.15
CLIP3-206ENST00000593074 C12orf74Q32Q52 190 aa14.08□□□□□ -0.16
CLIP3-206ENST00000593074 C9orf66Q5T8R8 295 aa14.08□□□□□ -0.16
CLIP3-206ENST00000593074 SAMD5Q5TGI4 173 aa14.08□□□□□ -0.16
CLIP3-206ENST00000593074 OR5A1Q8NGJ0 315 aa14.08□□□□□ -0.16
CLIP3-206ENST00000593074 LGALS3P17931 250 aaKnown RBP14.06□□□□□ -0.16
CLIP3-206ENST00000593074 CITED1Q99966 193 aa14.06□□□□□ -0.16
CLIP3-206ENST00000593074 OVOL2Q9BRP0 275 aa14.06□□□□□ -0.16
CLIP3-206ENST00000593074 RPL36AP83881 106 aaKnown RBP14.06□□□□□ -0.16
CLIP3-206ENST00000593074 RRN3P1Q2M238 152 aa14.06□□□□□ -0.16
CLIP3-206ENST00000593074 Q6ZUT4 128 aa14.06□□□□□ -0.16
CLIP3-206ENST00000593074 RPL36ALQ969Q0 106 aaKnown RBP14.06□□□□□ -0.16
CLIP3-206ENST00000593074 TIMM21Q9BVV7 248 aa14.06□□□□□ -0.16
CLIP3-206ENST00000593074 SPANXB1Q9NS25 103 aaPredicted RBP14.06□□□□□ -0.16
CLIP3-206ENST00000593074 FABP2P12104 132 aa14.05□□□□□ -0.16
CLIP3-206ENST00000593074 RNASE13Q5GAN3 156 aaKnown RBP14.05□□□□□ -0.16
CLIP3-206ENST00000593074 SLC25A29Q8N8R3 303 aa14.05□□□□□ -0.16
CLIP3-206ENST00000593074 TINCRA0A1B0GVN0 87 aa14.04□□□□□ -0.16
CLIP3-206ENST00000593074 DAZ4Q86SG3 579 aaKnown RBP14.04□□□□□ -0.16
CLIP3-206ENST00000593074 DAZ3Q9NR90 486 aaKnown RBP14.04□□□□□ -0.16
CLIP3-206ENST00000593074 SPCS1Q9Y6A9 102 aa14.04□□□□□ -0.16
CLIP3-206ENST00000593074 UBE2D3P61077 147 aa14.03□□□□□ -0.16
CLIP3-206ENST00000593074 UBE2D2P62837 147 aa14.03□□□□□ -0.16
CLIP3-206ENST00000593074 SRSF9Q13242 221 aaKnown RBP eCLIP14.03□□□□□ -0.16
CLIP3-206ENST00000593074 SPATA3Q8NHX4 192 aa14.03□□□□□ -0.16
CLIP3-206ENST00000593074 TMEM238LA0A1B0GVL6 79 aa14.03□□□□□ -0.16
CLIP3-206ENST00000593074 A6NJY4 79 aa14.03□□□□□ -0.16
CLIP3-206ENST00000593074 IGLL5B9A064 214 aa14.03□□□□□ -0.16
CLIP3-206ENST00000593074 CIDEAO60543 219 aa14.03□□□□□ -0.16
CLIP3-206ENST00000593074 TRGV2A0A075B6R0 118 aa14.02□□□□□ -0.17
CLIP3-206ENST00000593074 GAGE12BA1L429 117 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 161.7 ms