RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	CSPG4	Q6UVK1	2322 aa		7.02	□□□□□ -1.29
PPP4R1-222	ENST00000582594	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	7.02	□□□□□ -1.29
PPP4R1-222	ENST00000582594	IGKV2-29	A2NJV5	120 aa	Predicted RBP	7.02	□□□□□ -1.29
PPP4R1-222	ENST00000582594	IGHV1-58	A0A0C4DH39	117 aa		7.02	□□□□□ -1.29
PPP4R1-222	ENST00000582594	IGHV3-38	A0A0C4DH36	116 aa		7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	COX6C	P09669	75 aa		7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	MIA	Q16674	131 aa		7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	SMIM20	Q8N5G0	67 aa		7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	CHCHD5	Q9BSY4	110 aa		7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	CRYBG3	Q68DQ2	2970 aa		7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	IGHV4-61	A0A0C4DH41	118 aa		7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594		A6NDX4	124 aa		7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	SNRPD3	P62318	126 aa	Known RBP	7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	MRPS36	P82909	103 aa	Known RBP	7.01	□□□□□ -1.29
PPP4R1-222	ENST00000582594	SPG11	Q96JI7	2443 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594		H3BUA1	57 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	RBMY1A1	P0DJD3	496 aa	Known RBP	7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	RBMY1C	P0DJD4	496 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	RBMY1F	Q15415	496 aa	Known RBP	7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	CFAP161	Q6P656	301 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	ZNF625	Q96I27	306 aa	Predicted RBP	7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	TNFRSF18	Q9Y5U5	241 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	CREBBP	Q92793	2442 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	IGLV1-40	P01703	118 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	VSIG2	Q96IQ7	327 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	SPANXD	Q9BXN6	97 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	SPANXC	Q9NY87	97 aa		7	□□□□□ -1.29
PPP4R1-222	ENST00000582594	KLRB1	Q12918	225 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594		Q6Q795	121 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594		Q6ZSN1	163 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594	C19orf84	I3L1E1	186 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594	LST1	O00453	97 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594	SYNJ2BP	P57105	145 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594	MEIG1	Q5JSS6	88 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594	TMEM61	Q8N0U2	210 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594	TRGV11	A0A075B6L2	103 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594		H3BT86	120 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594		K7EMT4	169 aa		6.99	□□□□□ -1.29
PPP4R1-222	ENST00000582594		K7EQG2	157 aa		6.98	□□□□□ -1.29
PPP4R1-222	ENST00000582594	LINC00467	Q9BRT7	94 aa		6.98	□□□□□ -1.29
PPP4R1-222	ENST00000582594	HERV-K104	P63124	156 aa		6.98	□□□□□ -1.29
PPP4R1-222	ENST00000582594	CDKN2A-AS1	Q9UH64	79 aa		6.98	□□□□□ -1.29
PPP4R1-222	ENST00000582594	PYGO1	Q9Y3Y4	419 aa		6.98	□□□□□ -1.29
PPP4R1-222	ENST00000582594	BRI3	O95415	125 aa		6.97	□□□□□ -1.29
PPP4R1-222	ENST00000582594	CHCHD7	Q9BUK0	85 aa		6.97	□□□□□ -1.29
PPP4R1-222	ENST00000582594	TINCR	A0A1B0GVN0	87 aa		6.97	□□□□□ -1.29
PPP4R1-222	ENST00000582594	LINC01600	Q96MT4	127 aa		6.97	□□□□□ -1.29
PPP4R1-222	ENST00000582594	UBE2D4	Q9Y2X8	147 aa		6.97	□□□□□ -1.29
PPP4R1-222	ENST00000582594	CFHR3	Q02985	330 aa		6.96	□□□□□ -1.29
PPP4R1-222	ENST00000582594	CITED2	Q99967	270 aa	Predicted RBP	6.96	□□□□□ -1.29
PPP4R1-222	ENST00000582594	KMT2B	Q9UMN6	2715 aa	Predicted RBP	6.96	□□□□□ -1.3
PPP4R1-222	ENST00000582594	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	6.96	□□□□□ -1.3
PPP4R1-222	ENST00000582594	YAE1D1	Q9NRH1	226 aa		6.96	□□□□□ -1.3
PPP4R1-222	ENST00000582594	AVP	P01185	164 aa		6.96	□□□□□ -1.3
PPP4R1-222	ENST00000582594	SHISA2	Q6UWI4	295 aa		6.96	□□□□□ -1.3
PPP4R1-222	ENST00000582594	COX6A2	Q02221	97 aa		6.95	□□□□□ -1.3
PPP4R1-222	ENST00000582594	TMEM101	Q96IK0	257 aa		6.95	□□□□□ -1.3
PPP4R1-222	ENST00000582594	PSMB8	P28062	276 aa		6.95	□□□□□ -1.3
PPP4R1-222	ENST00000582594	PIMREG	Q9BSJ6	248 aa		6.95	□□□□□ -1.3
PPP4R1-222	ENST00000582594	FAM236A	A0A1B0GUQ0	79 aa		6.94	□□□□□ -1.3
PPP4R1-222	ENST00000582594	FAM236B	A0A1B0GV22	79 aa		6.94	□□□□□ -1.3
PPP4R1-222	ENST00000582594	IGHV4-59	P01825	116 aa		6.94	□□□□□ -1.3
PPP4R1-222	ENST00000582594	DEFB131A	P59861	70 aa		6.94	□□□□□ -1.3
PPP4R1-222	ENST00000582594	LY6D	Q14210	128 aa		6.94	□□□□□ -1.3
PPP4R1-222	ENST00000582594		Q9H8V8	135 aa		6.94	□□□□□ -1.3
PPP4R1-222	ENST00000582594	NDUFA7	O95182	113 aa		6.94	□□□□□ -1.3
PPP4R1-222	ENST00000582594		Q8N2B8	174 aa		6.94	□□□□□ -1.3
PPP4R1-222	ENST00000582594	IGHV4-30-2	A0A087WSY4	118 aa		6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	DGAT2L7P	Q6IED9	249 aa		6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	LINC00308	Q8TCZ7	52 aa		6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	SPANXA1	Q9NS26	97 aa		6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	DEFB121	Q5J5C9	76 aa		6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	SMCR5	Q8TEV8	140 aa		6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	CELSR2	Q9HCU4	2923 aa		6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	CSMD2	Q7Z408	3487 aa		6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	RBMY1B	A6NDE4	496 aa	Known RBP	6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	RBMY1E	A6NEQ0	496 aa	Known RBP	6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	RBMY1D	P0C7P1	496 aa	Known RBP	6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	MRPL23	Q16540	153 aa	Known RBP	6.93	□□□□□ -1.3
PPP4R1-222	ENST00000582594	FAM240A	A0A1B0GVK7	77 aa		6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	NDUFA1	O15239	70 aa		6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	CIRBP	Q14011	172 aa	Known RBP	6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	SOSTDC1	Q6X4U4	206 aa		6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	FAM110A	Q9BQ89	295 aa		6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	NCOR2	Q9Y618	2525 aa		6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	HOXD3	P31249	432 aa	Predicted RBP	6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	DEFB136	Q30KP8	78 aa		6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	HIST2H2BD	Q6DRA6	164 aa		6.92	□□□□□ -1.3
PPP4R1-222	ENST00000582594	TRAV13-1	A0A0B4J241	112 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	TRBV7-7	A0A0K0K1E9	115 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	COX7A2L	O14548	114 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	MSMB	P08118	114 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	UCN	P55089	124 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	DAZ2	Q13117	558 aa	Known RBP	6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	DEFB112	Q30KQ8	113 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	C18orf65	Q6ZTR6	163 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	DAZ4	Q86SG3	579 aa	Known RBP	6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	C10orf105	Q8TEF2	133 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	LINC01587	Q99440	93 aa		6.91	□□□□□ -1.3
PPP4R1-222	ENST00000582594	DAZ3	Q9NR90	486 aa	Known RBP	6.91	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 182.3 ms