RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 SPACA4Q8TDM5 124 aa8.26□□□□□ -1.09
SF3B3-202ENST00000562722 C7orf33Q8WU49 177 aa8.26□□□□□ -1.09
SF3B3-202ENST00000562722 RNF185Q96GF1 192 aa8.26□□□□□ -1.09
SF3B3-202ENST00000562722 GAGE12HA6NDE8 117 aa8.25□□□□□ -1.09
SF3B3-202ENST00000562722 F2Z2F3 143 aa8.25□□□□□ -1.09
SF3B3-202ENST00000562722 IFNA1P01562 189 aa8.25□□□□□ -1.09
SF3B3-202ENST00000562722 CFAP161Q6P656 301 aa8.25□□□□□ -1.09
SF3B3-202ENST00000562722 C11orf52Q96A22 123 aa8.25□□□□□ -1.09
SF3B3-202ENST00000562722 PGLYRP4Q96LB8 373 aa8.25□□□□□ -1.09
SF3B3-202ENST00000562722 NIT2Q9NQR4 276 aa8.25□□□□□ -1.09
SF3B3-202ENST00000562722 RAB19A4D1S5 217 aa8.24□□□□□ -1.09
SF3B3-202ENST00000562722 SLPIP03973 132 aa8.24□□□□□ -1.09
SF3B3-202ENST00000562722 CCL20P78556 96 aa8.24□□□□□ -1.09
SF3B3-202ENST00000562722 LYZL1Q6UWQ5 148 aa8.24□□□□□ -1.09
SF3B3-202ENST00000562722 IGKV2-24A0A0C4DH68 120 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 C19orf71A6NCJ1 209 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 TEX46H3BTG2 121 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 PHOX2AO14813 284 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 COX6A2Q02221 97 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 MAJINQ3KP22 176 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 HIGD2BQ4VC39 106 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 AMMECR1LQ6DCA0 310 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 GTSF1Q8WW33 167 aa8.23□□□□□ -1.09
SF3B3-202ENST00000562722 HMSDA8MTL9 139 aa8.22□□□□□ -1.09
SF3B3-202ENST00000562722 NTF3P20783 257 aa8.22□□□□□ -1.09
SF3B3-202ENST00000562722 RPS10P46783 165 aaKnown RBP8.22□□□□□ -1.09
SF3B3-202ENST00000562722 TWIST1Q15672 202 aa8.22□□□□□ -1.09
SF3B3-202ENST00000562722 C15orf56Q8N910 161 aa8.22□□□□□ -1.09
SF3B3-202ENST00000562722 SMIM12Q96EX1 92 aa8.22□□□□□ -1.09
SF3B3-202ENST00000562722 BIN3Q9NQY0 253 aa8.22□□□□□ -1.09
SF3B3-202ENST00000562722 PLAC8Q9NZF1 115 aa8.22□□□□□ -1.09
SF3B3-202ENST00000562722 RNASEKQ6P5S7 137 aaKnown RBP8.21□□□□□ -1.1
SF3B3-202ENST00000562722 MED9Q9NWA0 146 aa8.21□□□□□ -1.1
SF3B3-202ENST00000562722 TRAV26-2A0A0B4J265 109 aa8.2□□□□□ -1.1
SF3B3-202ENST00000562722 PDE6DO43924 150 aa8.2□□□□□ -1.1
SF3B3-202ENST00000562722 NDUFS6O75380 124 aaKnown RBP8.2□□□□□ -1.1
SF3B3-202ENST00000562722 MEF2BQ02080 365 aaPredicted RBP8.2□□□□□ -1.1
SF3B3-202ENST00000562722 LYPD6BQ8NI32 183 aa8.2□□□□□ -1.1
SF3B3-202ENST00000562722 CHCHD10Q8WYQ3 142 aaPredicted RBP8.2□□□□□ -1.1
SF3B3-202ENST00000562722 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.19□□□□□ -1.1
SF3B3-202ENST00000562722 TRAV1-1A0A0B4J248 108 aa8.19□□□□□ -1.1
SF3B3-202ENST00000562722 IGKV2-29A2NJV5 120 aaPredicted RBP8.19□□□□□ -1.1
SF3B3-202ENST00000562722 CTRLP40313 264 aa8.19□□□□□ -1.1
SF3B3-202ENST00000562722 EIF5AL1Q6IS14 154 aaKnown RBP8.19□□□□□ -1.1
SF3B3-202ENST00000562722 SMIM15Q7Z3B0 74 aa8.19□□□□□ -1.1
SF3B3-202ENST00000562722 C9orf62Q8N4C0 152 aa8.19□□□□□ -1.1
SF3B3-202ENST00000562722 STPG4Q8N801 248 aa8.19□□□□□ -1.1
SF3B3-202ENST00000562722 GATD1Q8NB37 220 aa8.19□□□□□ -1.1
SF3B3-202ENST00000562722 PRSS3P2Q8NHM4 247 aa8.19□□□□□ -1.1
SF3B3-202ENST00000562722 TRBV20OR9-2A0A075B6H5 130 aa8.18□□□□□ -1.1
SF3B3-202ENST00000562722 APCSP02743 223 aa8.18□□□□□ -1.1
SF3B3-202ENST00000562722 PRR3P79522 188 aaKnown RBP8.18□□□□□ -1.1
SF3B3-202ENST00000562722 Q6ZNX1 250 aa8.18□□□□□ -1.1
SF3B3-202ENST00000562722 NUDT10Q8NFP7 164 aa8.18□□□□□ -1.1
SF3B3-202ENST00000562722 RPL39LQ96EH5 51 aaKnown RBP8.18□□□□□ -1.1
SF3B3-202ENST00000562722 NUDT11Q96G61 164 aa8.18□□□□□ -1.1
SF3B3-202ENST00000562722 TNXBP22105 4242 aa8.17□□□□□ -1.1
SF3B3-202ENST00000562722 RPP21Q9H633 154 aaKnown RBP8.17□□□□□ -1.1
SF3B3-202ENST00000562722 RNF213Q63HN8 5207 aa8.17□□□□□ -1.1
SF3B3-202ENST00000562722 GVQW2A0A096LPI5 108 aaPredicted RBP8.16□□□□□ -1.1
SF3B3-202ENST00000562722 NCR2O95944 276 aa8.16□□□□□ -1.1
SF3B3-202ENST00000562722 BCL2P10415 239 aa8.16□□□□□ -1.1
SF3B3-202ENST00000562722 FGF6P10767 208 aa8.16□□□□□ -1.1
SF3B3-202ENST00000562722 XCL1P47992 114 aa8.16□□□□□ -1.1
SF3B3-202ENST00000562722 TMEM101Q96IK0 257 aa8.16□□□□□ -1.1
SF3B3-202ENST00000562722 RNASE7Q9H1E1 156 aaKnown RBP8.16□□□□□ -1.1
SF3B3-202ENST00000562722 PKIGQ9Y2B9 76 aa8.16□□□□□ -1.1
SF3B3-202ENST00000562722 LRP2P98164 4655 aa8.16□□□□□ -1.1
SF3B3-202ENST00000562722 A0A096LNI7 61 aa8.15□□□□□ -1.1
SF3B3-202ENST00000562722 H7C423 109 aa8.15□□□□□ -1.1
SF3B3-202ENST00000562722 BTF3L4Q96K17 158 aa8.15□□□□□ -1.1
SF3B3-202ENST00000562722 LINC01600Q96MT4 127 aa8.15□□□□□ -1.1
SF3B3-202ENST00000562722 CNFNQ9BYD5 112 aa8.15□□□□□ -1.1
SF3B3-202ENST00000562722 SDHAF1A6NFY7 115 aa8.14□□□□□ -1.11
SF3B3-202ENST00000562722 PMCHP20382 165 aa8.14□□□□□ -1.11
SF3B3-202ENST00000562722 FOXI1Q12951 378 aa8.14□□□□□ -1.11
SF3B3-202ENST00000562722 TEX261Q6UWH6 196 aa8.14□□□□□ -1.11
SF3B3-202ENST00000562722 LINC00474Q9P2X8 69 aa8.14□□□□□ -1.11
SF3B3-202ENST00000562722 CCL25O15444 150 aa8.13□□□□□ -1.11
SF3B3-202ENST00000562722 ZNF25P17030 456 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-202ENST00000562722 FOXA3P55318 350 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-202ENST00000562722 OR5A1Q8NGJ0 315 aa8.13□□□□□ -1.11
SF3B3-202ENST00000562722 LINC00526Q96FQ7 95 aa8.13□□□□□ -1.11
SF3B3-202ENST00000562722 CARD19Q96LW7 228 aa8.13□□□□□ -1.11
SF3B3-202ENST00000562722 IGHV1-58A0A0C4DH39 117 aa8.12□□□□□ -1.11
SF3B3-202ENST00000562722 I3L3M4 83 aa8.12□□□□□ -1.11
SF3B3-202ENST00000562722 K7EN84 100 aa8.12□□□□□ -1.11
SF3B3-202ENST00000562722 ODF1Q14990 250 aa8.12□□□□□ -1.11
SF3B3-202ENST00000562722 REG3GQ6UW15 175 aa8.12□□□□□ -1.11
SF3B3-202ENST00000562722 LINC00959A0A1B0GUT2 108 aa8.11□□□□□ -1.11
SF3B3-202ENST00000562722 ZNF561-AS1K7EIQ3 104 aa8.11□□□□□ -1.11
SF3B3-202ENST00000562722 GATCO43716 136 aaKnown RBP8.11□□□□□ -1.11
SF3B3-202ENST00000562722 TAGLN2P37802 199 aaKnown RBP8.11□□□□□ -1.11
SF3B3-202ENST00000562722 SS18Q15532 418 aa8.11□□□□□ -1.11
SF3B3-202ENST00000562722 SPINK6Q6UWN8 80 aa8.11□□□□□ -1.11
SF3B3-202ENST00000562722 OCC1Q8TAD7 63 aa8.11□□□□□ -1.11
SF3B3-202ENST00000562722 BORCS7Q96B45 105 aa8.11□□□□□ -1.11
SF3B3-202ENST00000562722 MRAP2Q96G30 205 aa8.11□□□□□ -1.11
SF3B3-202ENST00000562722 TMEM242Q9NWH2 141 aa8.11□□□□□ -1.11
SF3B3-202ENST00000562722 A0A0J9YXV3 536 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms