RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 TRBV7-3A0A075B6L6 115 aa9.8□□□□□ -0.84
USP3-221ENST00000561442 IGHV3-38A0A0C4DH36 116 aa9.8□□□□□ -0.84
USP3-221ENST00000561442 M0QY20 66 aa9.8□□□□□ -0.84
USP3-221ENST00000561442 RAB4AP20338 218 aa9.8□□□□□ -0.84
USP3-221ENST00000561442 UBE2D3P61077 147 aa9.8□□□□□ -0.84
USP3-221ENST00000561442 UBE2D2P62837 147 aa9.8□□□□□ -0.84
USP3-221ENST00000561442 RIGQ13278 110 aa9.8□□□□□ -0.84
USP3-221ENST00000561442 KRTAP1-5Q9BYS1 174 aa9.8□□□□□ -0.84
USP3-221ENST00000561442 TRAV26-2A0A0B4J265 109 aa9.79□□□□□ -0.84
USP3-221ENST00000561442 H7C1H1 209 aa9.79□□□□□ -0.84
USP3-221ENST00000561442 LELP1Q5T871 98 aa9.79□□□□□ -0.84
USP3-221ENST00000561442 TRAV8-6A0A0B4J262 113 aa9.78□□□□□ -0.84
USP3-221ENST00000561442 SERF1AO75920 110 aa9.78□□□□□ -0.84
USP3-221ENST00000561442 TTC32Q5I0X7 151 aa9.77□□□□□ -0.85
USP3-221ENST00000561442 TNFRSF18Q9Y5U5 241 aa9.77□□□□□ -0.85
USP3-221ENST00000561442 HECTD4Q9Y4D8 3996 aa9.76□□□□□ -0.85
USP3-221ENST00000561442 CAMPP49913 170 aa9.76□□□□□ -0.85
USP3-221ENST00000561442 LINC00310P59036 64 aa9.76□□□□□ -0.85
USP3-221ENST00000561442 CTAG1AP78358 180 aa9.76□□□□□ -0.85
USP3-221ENST00000561442 C1orf134Q5TEV5 83 aa9.76□□□□□ -0.85
USP3-221ENST00000561442 C18orf32Q8TCD1 76 aa9.76□□□□□ -0.85
USP3-221ENST00000561442 ALKBH7Q9BT30 221 aaPredicted RBP9.76□□□□□ -0.85
USP3-221ENST00000561442 TMEM191AQ9H0A3 160 aa9.76□□□□□ -0.85
USP3-221ENST00000561442 DNAH10OSP0CZ25 163 aa9.75□□□□□ -0.85
USP3-221ENST00000561442 PMCHP20382 165 aa9.75□□□□□ -0.85
USP3-221ENST00000561442 AMN1Q8IY45 258 aa9.75□□□□□ -0.85
USP3-221ENST00000561442 Q8N3U1 123 aa9.75□□□□□ -0.85
USP3-221ENST00000561442 CHCHD1Q96BP2 118 aaKnown RBP9.75□□□□□ -0.85
USP3-221ENST00000561442 RPL39LQ96EH5 51 aaKnown RBP9.75□□□□□ -0.85
USP3-221ENST00000561442 DNAJC30Q96LL9 226 aa9.75□□□□□ -0.85
USP3-221ENST00000561442 RTL8CO15255 209 aa9.74□□□□□ -0.85
USP3-221ENST00000561442 IGHV3-30P01768 117 aa9.74□□□□□ -0.85
USP3-221ENST00000561442 IGHV3-33P01772 117 aa9.74□□□□□ -0.85
USP3-221ENST00000561442 IGHV3-30-3P0DP02 117 aa9.74□□□□□ -0.85
USP3-221ENST00000561442 IGHV3-30-5P0DP03 117 aa9.74□□□□□ -0.85
USP3-221ENST00000561442 C6orf223Q8N319 242 aa9.74□□□□□ -0.85
USP3-221ENST00000561442 DEFB104AQ8WTQ1 72 aa9.74□□□□□ -0.85
USP3-221ENST00000561442 RNF185Q96GF1 192 aa9.74□□□□□ -0.85
USP3-221ENST00000561442 DNAH11Q96DT5 4516 aa9.73□□□□□ -0.85
USP3-221ENST00000561442 SMKR1H3BMG3 65 aa9.73□□□□□ -0.85
USP3-221ENST00000561442 NUPR1O60356 82 aa9.73□□□□□ -0.85
USP3-221ENST00000561442 GAS8-AS1O95177 125 aa9.73□□□□□ -0.85
USP3-221ENST00000561442 DAZ4Q86SG3 579 aaKnown RBP9.73□□□□□ -0.85
USP3-221ENST00000561442 DAZ3Q9NR90 486 aaKnown RBP9.73□□□□□ -0.85
USP3-221ENST00000561442 TRAV9-2A0A087WT02 112 aa9.72□□□□□ -0.85
USP3-221ENST00000561442 TRBV6-8A0A0A6YYG3 113 aa9.72□□□□□ -0.85
USP3-221ENST00000561442 LINC00587B1AMM8 73 aa9.72□□□□□ -0.85
USP3-221ENST00000561442 NCR2O95944 276 aa9.72□□□□□ -0.85
USP3-221ENST00000561442 SCGB1D1O95968 90 aa9.72□□□□□ -0.85
USP3-221ENST00000561442 AMTP48728 403 aa9.72□□□□□ -0.85
USP3-221ENST00000561442 KIAA1644Q3SXP7 199 aa9.72□□□□□ -0.85
USP3-221ENST00000561442 LINC01556Q5JQF7 62 aa9.72□□□□□ -0.85
USP3-221ENST00000561442 EPPK1P58107 5090 aaKnown RBP9.71□□□□□ -0.86
USP3-221ENST00000561442 HSBP1O75506 76 aa9.71□□□□□ -0.86
USP3-221ENST00000561442 FAM104BQ5XKR9 115 aa9.71□□□□□ -0.86
USP3-221ENST00000561442 TEX43Q6ZNM6 134 aa9.71□□□□□ -0.86
USP3-221ENST00000561442 NTM-AS1Q6ZSK4 140 aa9.71□□□□□ -0.86
USP3-221ENST00000561442 PKD1P98161 4303 aa9.7□□□□□ -0.86
USP3-221ENST00000561442 DDTP30046 118 aa9.7□□□□□ -0.86
USP3-221ENST00000561442 MRPL51Q4U2R6 128 aaKnown RBP9.7□□□□□ -0.86
USP3-221ENST00000561442 LBHQ53QV2 105 aaPredicted RBP9.7□□□□□ -0.86
USP3-221ENST00000561442 NIT1Q86X76 327 aa9.7□□□□□ -0.86
USP3-221ENST00000561442 MRAP2Q96G30 205 aa9.7□□□□□ -0.86
USP3-221ENST00000561442 CHCHD5Q9BSY4 110 aa9.7□□□□□ -0.86
USP3-221ENST00000561442 TMEM262E9PQX1 116 aa9.69□□□□□ -0.86
USP3-221ENST00000561442 PMCHL1Q16048 86 aa9.69□□□□□ -0.86
USP3-221ENST00000561442 TMEM97Q5BJF2 176 aa9.69□□□□□ -0.86
USP3-221ENST00000561442 CDPF1Q6NVV7 123 aa9.69□□□□□ -0.86
USP3-221ENST00000561442 MRPL52Q86TS9 123 aaKnown RBP9.69□□□□□ -0.86
USP3-221ENST00000561442 C10orf126Q8N4M7 172 aa9.69□□□□□ -0.86
USP3-221ENST00000561442 TRBV25-1A0A075B6N4 114 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 A0A087WX48 190 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 IGHV1-24A0A0C4DH33 117 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 SDHAF1A6NFY7 115 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 PRSS29PA6NIE9 313 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 GAGE6Q13070 117 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 COTL1Q14019 142 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 LINC00336Q6ZUF6 198 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 ZNF664Q8N3J9 261 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 ST20Q9HBF5 79 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 LAMTOR2Q9Y2Q5 125 aa9.68□□□□□ -0.86
USP3-221ENST00000561442 K7EP13 123 aa9.67□□□□□ -0.86
USP3-221ENST00000561442 PPBPP02775 128 aa9.67□□□□□ -0.86
USP3-221ENST00000561442 Q9HAA7 133 aa9.67□□□□□ -0.86
USP3-221ENST00000561442 TRBV6-5A0A0K0K1A5 114 aa9.66□□□□□ -0.86
USP3-221ENST00000561442 C20orf202A1L168 122 aa9.66□□□□□ -0.86
USP3-221ENST00000561442 IBA57-AS1B1ANH7 110 aa9.66□□□□□ -0.86
USP3-221ENST00000561442 LINC00614P0C842 121 aa9.66□□□□□ -0.86
USP3-221ENST00000561442 CKS2P33552 79 aa9.66□□□□□ -0.86
USP3-221ENST00000561442 TNP2Q05952 138 aa9.66□□□□□ -0.86
USP3-221ENST00000561442 RNASEKQ6P5S7 137 aaKnown RBP9.66□□□□□ -0.86
USP3-221ENST00000561442 NRACQ8N912 160 aa9.66□□□□□ -0.86
USP3-221ENST00000561442 TMEM243Q9BU79 118 aa9.66□□□□□ -0.86
USP3-221ENST00000561442 D6R8Y8 96 aa9.65□□□□□ -0.86
USP3-221ENST00000561442 BTF3P20290 206 aaKnown RBP9.65□□□□□ -0.86
USP3-221ENST00000561442 MPV17L2Q567V2 206 aa9.65□□□□□ -0.86
USP3-221ENST00000561442 Q6ZRN7 208 aaPredicted RBP9.65□□□□□ -0.86
USP3-221ENST00000561442 TMEM70Q9BUB7 260 aa9.65□□□□□ -0.86
USP3-221ENST00000561442 VAMP8Q9BV40 100 aa9.65□□□□□ -0.86
USP3-221ENST00000561442 KLK12Q9UKR0 248 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms