RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CCL3L1P16619 93 aa10.1□□□□□ -0.79
SHMT2-226ENST00000556825 C4orf48Q5BLP8 95 aa10.1□□□□□ -0.79
SHMT2-226ENST00000556825 LINC00308Q8TCZ7 52 aa10.1□□□□□ -0.79
SHMT2-226ENST00000556825 KIF25-AS1Q9Y6Z4 181 aa10.1□□□□□ -0.79
SHMT2-226ENST00000556825 DEFB124Q8NES8 71 aa10.1□□□□□ -0.79
SHMT2-226ENST00000556825 WFDC9Q8NEX5 89 aa10.1□□□□□ -0.79
SHMT2-226ENST00000556825 OTOGLQ3ZCN5 2332 aa10.1□□□□□ -0.79
SHMT2-226ENST00000556825 IGLV4-3A0A075B6K6 122 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 IBA57-AS1B1ANH7 110 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 OVOL2Q9BRP0 275 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 SNURFQ9Y675 71 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 S4R3C0 116 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 DNAJC13O75165 2243 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 BLCAPP62952 87 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 ENHOQ6UWT2 76 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 TTTY12Q9BZ98 90 aa10.09□□□□□ -0.79
SHMT2-226ENST00000556825 TRBV6-5A0A0K0K1A5 114 aa10.08□□□□□ -0.8
SHMT2-226ENST00000556825 SUMO4Q6EEV6 95 aa10.08□□□□□ -0.8
SHMT2-226ENST00000556825 EP300Q09472 2414 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-226ENST00000556825 FAM229BQ4G0N7 80 aa10.07□□□□□ -0.8
SHMT2-226ENST00000556825 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.07□□□□□ -0.8
SHMT2-226ENST00000556825 U3KQE9 123 aa10.07□□□□□ -0.8
SHMT2-226ENST00000556825 PRR9Q5T870 116 aa10.07□□□□□ -0.8
SHMT2-226ENST00000556825 MRPL53Q96EL3 112 aaKnown RBP10.07□□□□□ -0.8
SHMT2-226ENST00000556825 A8MZ25 164 aa10.06□□□□□ -0.8
SHMT2-226ENST00000556825 F8W735 103 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-226ENST00000556825 RNASE4P34096 147 aaKnown RBP10.06□□□□□ -0.8
SHMT2-226ENST00000556825 C20orf203Q8NBC4 194 aa10.06□□□□□ -0.8
SHMT2-226ENST00000556825 SPRY3O43610 288 aa10.06□□□□□ -0.8
SHMT2-226ENST00000556825 SOSTDC1Q6X4U4 206 aa10.06□□□□□ -0.8
SHMT2-226ENST00000556825 ABCA1O95477 2261 aa10.06□□□□□ -0.8
SHMT2-226ENST00000556825 ATP1A1-AS1Q5TC04 95 aa10.05□□□□□ -0.8
SHMT2-226ENST00000556825 HIST2H2BCQ6DN03 193 aa10.05□□□□□ -0.8
SHMT2-226ENST00000556825 HIST2H2BDQ6DRA6 164 aa10.05□□□□□ -0.8
SHMT2-226ENST00000556825 VMO1Q7Z5L0 202 aa10.05□□□□□ -0.8
SHMT2-226ENST00000556825 MRPL55Q7Z7F7 128 aaKnown RBP10.05□□□□□ -0.8
SHMT2-226ENST00000556825 LENEPQ9Y5L5 61 aa10.05□□□□□ -0.8
SHMT2-226ENST00000556825 TRAV21A0A0B4J279 112 aa10.04□□□□□ -0.8
SHMT2-226ENST00000556825 NDUFA1O15239 70 aa10.04□□□□□ -0.8
SHMT2-226ENST00000556825 HOXD3P31249 432 aaPredicted RBP10.04□□□□□ -0.8
SHMT2-226ENST00000556825 STHQ8IWL8 128 aa10.04□□□□□ -0.8
SHMT2-226ENST00000556825 LY6G5BQ8NDX9 201 aa10.04□□□□□ -0.8
SHMT2-226ENST00000556825 ZNF625Q96I27 306 aaPredicted RBP10.04□□□□□ -0.8
SHMT2-226ENST00000556825 MALRD1Q5VYJ5 2156 aa10.03□□□□□ -0.8
SHMT2-226ENST00000556825 CNOT1A5YKK6 2376 aaKnown RBP10.03□□□□□ -0.8
SHMT2-226ENST00000556825 SPRR3Q9UBC9 169 aa10.03□□□□□ -0.8
SHMT2-226ENST00000556825 RPL11P62913 178 aaKnown RBP10.02□□□□□ -0.81
SHMT2-226ENST00000556825 CLPSL1A2RUU4 121 aa10.02□□□□□ -0.81
SHMT2-226ENST00000556825 F5H697 171 aa10.02□□□□□ -0.81
SHMT2-226ENST00000556825 NCR3O14931 201 aa10.02□□□□□ -0.81
SHMT2-226ENST00000556825 RNASE3P12724 160 aaKnown RBP10.02□□□□□ -0.81
SHMT2-226ENST00000556825 DEFB127Q9H1M4 99 aa10.02□□□□□ -0.81
SHMT2-226ENST00000556825 IGLV1-44P01699 117 aa10.01□□□□□ -0.81
SHMT2-226ENST00000556825 PIK3CD-AS1Q5SR53 167 aa10.01□□□□□ -0.81
SHMT2-226ENST00000556825 FAM186AA6NE01 2351 aa10.01□□□□□ -0.81
SHMT2-226ENST00000556825 IGLV11-55A0A075B6I3 123 aa10.01□□□□□ -0.81
SHMT2-226ENST00000556825 C15orf32Q32M92 178 aa10.01□□□□□ -0.81
SHMT2-226ENST00000556825 URB1O60287 2271 aaKnown RBP10□□□□□ -0.81
SHMT2-226ENST00000556825 GNRH2O43555 120 aa10□□□□□ -0.81
SHMT2-226ENST00000556825 IGF1P05019 195 aa10□□□□□ -0.81
SHMT2-226ENST00000556825 ESRGQ1W209 222 aa10□□□□□ -0.81
SHMT2-226ENST00000556825 PRSS33Q8NF86 280 aa10□□□□□ -0.81
SHMT2-226ENST00000556825 A0A087WYN8 130 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 PF4P02776 101 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 CTSGP08311 255 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 CD28P10747 220 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 C6orf223Q8N319 242 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 ZFAND2AQ8N6M9 145 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 DAD1P61803 113 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 FAM104AQ969W3 186 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 NBEAQ8NFP9 2946 aa9.99□□□□□ -0.81
SHMT2-226ENST00000556825 FRYQ5TBA9 3013 aa9.98□□□□□ -0.81
SHMT2-226ENST00000556825 IGHV1-3A0A0C4DH29 117 aa9.98□□□□□ -0.81
SHMT2-226ENST00000556825 MIFP14174 115 aa9.98□□□□□ -0.81
SHMT2-226ENST00000556825 RNF5Q99942 180 aa9.98□□□□□ -0.81
SHMT2-226ENST00000556825 IGHV3OR16-8A0A075B7F1 116 aa9.97□□□□□ -0.81
SHMT2-226ENST00000556825 A0A087WWL8 130 aa9.97□□□□□ -0.81
SHMT2-226ENST00000556825 IGHV3-23P01764 117 aa9.97□□□□□ -0.81
SHMT2-226ENST00000556825 TRAV10A0A0B4J240 114 aa9.97□□□□□ -0.81
SHMT2-226ENST00000556825 H0YGX0 51 aa9.97□□□□□ -0.81
SHMT2-226ENST00000556825 FDCSPQ8NFU4 85 aa9.97□□□□□ -0.81
SHMT2-226ENST00000556825 UBL5Q9BZL1 73 aa9.97□□□□□ -0.81
SHMT2-226ENST00000556825 ADORA2A-AS1P86434 159 aa9.96□□□□□ -0.82
SHMT2-226ENST00000556825 MIR7-3HGQ8N6C7 128 aa9.96□□□□□ -0.82
SHMT2-226ENST00000556825 RIF1Q5UIP0 2472 aaKnown RBP9.96□□□□□ -0.82
SHMT2-226ENST00000556825 ARHGAP32A7KAX9 2087 aa9.95□□□□□ -0.82
SHMT2-226ENST00000556825 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.95□□□□□ -0.82
SHMT2-226ENST00000556825 M0QY20 66 aa9.95□□□□□ -0.82
SHMT2-226ENST00000556825 IGHV1-8P0DP01 117 aa9.95□□□□□ -0.82
SHMT2-226ENST00000556825 TM2D3Q9BRN9 247 aa9.95□□□□□ -0.82
SHMT2-226ENST00000556825 PLCE1Q9P212 2302 aa9.94□□□□□ -0.82
SHMT2-226ENST00000556825 RBM12B-AS1Q9P1G2 102 aa9.94□□□□□ -0.82
SHMT2-226ENST00000556825 LOC400499M0QZD8 3231 aa9.94□□□□□ -0.82
SHMT2-226ENST00000556825 TRBV7-4A0A0J9YYF1 115 aa9.94□□□□□ -0.82
SHMT2-226ENST00000556825 DEFB109BQ30KR1 87 aa9.94□□□□□ -0.82
SHMT2-226ENST00000556825 UNQ9165/PRO28630Q6UXU0 137 aa9.94□□□□□ -0.82
SHMT2-226ENST00000556825 SPENQ96T58 3664 aaKnown RBP9.94□□□□□ -0.82
SHMT2-226ENST00000556825 ASPMQ8IZT6 3477 aa9.93□□□□□ -0.82
SHMT2-226ENST00000556825 IGHV3-66A0A0C4DH42 116 aa9.93□□□□□ -0.82
SHMT2-226ENST00000556825 IGHV1-46P01743 117 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 267.4 ms