RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 GAGE12JA6NER3 117 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 C11orf86A6NJI1 115 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 GAGE7O76087 117 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 GAGE12FP0CL80 117 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 GAGE12GP0CL81 117 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 GAGE12IP0CL82 117 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 GAGE4Q13068 117 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 OPRPNQ99935 248 aaPredicted RBP10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 IGHG2P01859 326 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 TSPEAR-AS2P59090 65 aa10.66□□□□□ -0.7
SFSWAP-210ENST00000541286 FAM223BA6NKX1 122 aa10.65□□□□□ -0.71
SFSWAP-210ENST00000541286 OVOL1O14753 267 aa10.65□□□□□ -0.71
SFSWAP-210ENST00000541286 FAM223AQ8IWN6 122 aa10.65□□□□□ -0.71
SFSWAP-210ENST00000541286 CHCHD5Q9BSY4 110 aa10.65□□□□□ -0.71
SFSWAP-210ENST00000541286 U3KQE9 123 aa10.65□□□□□ -0.71
SFSWAP-210ENST00000541286 MGAM2Q2M2H8 2515 aa10.65□□□□□ -0.71
SFSWAP-210ENST00000541286 UBE2D1P51668 147 aa10.64□□□□□ -0.71
SFSWAP-210ENST00000541286 UBE2D3P61077 147 aa10.64□□□□□ -0.71
SFSWAP-210ENST00000541286 UBE2D2P62837 147 aa10.64□□□□□ -0.71
SFSWAP-210ENST00000541286 NEXN-AS1Q8NBZ9 246 aa10.64□□□□□ -0.71
SFSWAP-210ENST00000541286 TP53TG1Q9Y2A0 90 aa10.64□□□□□ -0.71
SFSWAP-210ENST00000541286 HILS1P60008 231 aa10.64□□□□□ -0.71
SFSWAP-210ENST00000541286 PRIMA1Q86XR5 153 aa10.64□□□□□ -0.71
SFSWAP-210ENST00000541286 PSMG4Q5JS54 123 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 ATP6V0E2Q8NHE4 81 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 MRPL53Q96EL3 112 aaKnown RBP10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 NDUFA4O00483 81 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 IFITM1P13164 125 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 ZNF580Q9UK33 172 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 KLK9Q9UKQ9 250 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 A0A0J9YY99 117 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 A4D1N5 150 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 RNASE3P12724 160 aaKnown RBP10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 MEIG1Q5JSS6 88 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 Q8N1Y9 231 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 C15orf53Q8NAA6 179 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 LINC01006Q8NI28 216 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 NBEAL2Q6ZNJ1 2754 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 MUC4Q99102 2169 aa10.63□□□□□ -0.71
SFSWAP-210ENST00000541286 KRTAP10-3P60369 221 aa10.62□□□□□ -0.71
SFSWAP-210ENST00000541286 ZNF56Q15929 161 aa10.62□□□□□ -0.71
SFSWAP-210ENST00000541286 CITED1Q99966 193 aa10.62□□□□□ -0.71
SFSWAP-210ENST00000541286 NBEAL1Q6ZS30 2694 aa10.62□□□□□ -0.71
SFSWAP-210ENST00000541286 PRSS2P07478 247 aa10.62□□□□□ -0.71
SFSWAP-210ENST00000541286 CD28P10747 220 aa10.62□□□□□ -0.71
SFSWAP-210ENST00000541286 TOMM6Q96B49 74 aa10.62□□□□□ -0.71
SFSWAP-210ENST00000541286 PRO1854Q9UHT4 67 aa10.62□□□□□ -0.71
SFSWAP-210ENST00000541286 LINC01546A6NGU7 62 aa10.61□□□□□ -0.71
SFSWAP-210ENST00000541286 IGHV3-73A0A0B4J1V6 119 aa10.61□□□□□ -0.71
SFSWAP-210ENST00000541286 RHODO00212 210 aa10.61□□□□□ -0.71
SFSWAP-210ENST00000541286 SPATA3Q8NHX4 192 aa10.61□□□□□ -0.71
SFSWAP-210ENST00000541286 DAZ1Q9NQZ3 744 aaKnown RBP10.61□□□□□ -0.71
SFSWAP-210ENST00000541286 C10orf126Q8N4M7 172 aa10.6□□□□□ -0.71
SFSWAP-210ENST00000541286 CRYGDP07320 174 aa10.6□□□□□ -0.71
SFSWAP-210ENST00000541286 ID1P41134 155 aa10.6□□□□□ -0.71
SFSWAP-210ENST00000541286 SPINK13Q1W4C9 94 aa10.6□□□□□ -0.71
SFSWAP-210ENST00000541286 IGHV4-4A0A075B6R2 117 aa10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 SDHAF1A6NFY7 115 aa10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 EIF4EBP3O60516 100 aaPredicted RBP10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 C19orf54Q5BKX5 351 aa10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 MDFICQ9P1T7 246 aa10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 DNHD1Q96M86 4753 aa10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 IGHV3-30P01768 117 aa10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 IGHV3-30-5P0DP03 117 aa10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 SUMO4Q6EEV6 95 aa10.59□□□□□ -0.71
SFSWAP-210ENST00000541286 CITED2Q99967 270 aaPredicted RBP10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 PPDPFQ9H3Y8 114 aa10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 SOCS3O14543 225 aa10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 TRAV8-4A0A0B4J246 113 aa10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 TMEM262E9PQX1 116 aa10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 RNASE1P07998 156 aaKnown RBP10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 NSUN5P1Q3KNT7 163 aa10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 MUSTN1Q8IVN3 82 aa10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 LENEPQ9Y5L5 61 aa10.58□□□□□ -0.72
SFSWAP-210ENST00000541286 TSHBP01222 138 aa10.57□□□□□ -0.72
SFSWAP-210ENST00000541286 CFHR3Q02985 330 aa10.57□□□□□ -0.72
SFSWAP-210ENST00000541286 ZNRF2Q8NHG8 242 aa10.57□□□□□ -0.72
SFSWAP-210ENST00000541286 USMG5Q96IX5 58 aa10.57□□□□□ -0.72
SFSWAP-210ENST00000541286 TRAV12-1A0A0B4J245 112 aa10.57□□□□□ -0.72
SFSWAP-210ENST00000541286 PRM2P04554 102 aa10.56□□□□□ -0.72
SFSWAP-210ENST00000541286 SYNJ2BPP57105 145 aa10.56□□□□□ -0.72
SFSWAP-210ENST00000541286 KRTAP24-1Q3LI83 254 aa10.56□□□□□ -0.72
SFSWAP-210ENST00000541286 PSMB8P28062 276 aa10.56□□□□□ -0.72
SFSWAP-210ENST00000541286 LGALS3P17931 250 aaKnown RBP10.56□□□□□ -0.72
SFSWAP-210ENST00000541286 MRPL23Q16540 153 aaKnown RBP10.56□□□□□ -0.72
SFSWAP-210ENST00000541286 ODF3Q96PU9 254 aa10.56□□□□□ -0.72
SFSWAP-210ENST00000541286 HERVK_113P61574 105 aa10.55□□□□□ -0.72
SFSWAP-210ENST00000541286 RNASE13Q5GAN3 156 aaKnown RBP10.55□□□□□ -0.72
SFSWAP-210ENST00000541286 LYRM7Q5U5X0 104 aa10.55□□□□□ -0.72
SFSWAP-210ENST00000541286 IGLV4-69A0A075B6H9 119 aa10.55□□□□□ -0.72
SFSWAP-210ENST00000541286 IGLV1-40P01703 118 aa10.55□□□□□ -0.72
SFSWAP-210ENST00000541286 CLEC2BQ92478 149 aa10.55□□□□□ -0.72
SFSWAP-210ENST00000541286 VCX2Q9H322 139 aa10.55□□□□□ -0.72
SFSWAP-210ENST00000541286 KNCNA6PVL3 124 aa10.54□□□□□ -0.72
SFSWAP-210ENST00000541286 SLURP1P55000 103 aa10.54□□□□□ -0.72
SFSWAP-210ENST00000541286 J3QQQ9 107 aa10.54□□□□□ -0.72
SFSWAP-210ENST00000541286 A8MZ25 164 aa10.54□□□□□ -0.72
SFSWAP-210ENST00000541286 VCYO14598 125 aa10.54□□□□□ -0.72
SFSWAP-210ENST00000541286 IGHV4OR15-8A0A075B7B6 117 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms