RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 DPM3Q9P2X0 92 aa10.42□□□□□ -0.74
PCF11-204ENST00000530660 MALP21145 153 aa10.41□□□□□ -0.74
PCF11-204ENST00000530660 FAM223AQ8IWN6 122 aa10.41□□□□□ -0.74
PCF11-204ENST00000530660 PIMREGQ9BSJ6 248 aa10.41□□□□□ -0.74
PCF11-204ENST00000530660 PRO0628Q9UI54 55 aa10.41□□□□□ -0.74
PCF11-204ENST00000530660 C9orf129Q5T035 196 aaKnown RBP10.41□□□□□ -0.74
PCF11-204ENST00000530660 MRPL53Q96EL3 112 aaKnown RBP10.41□□□□□ -0.74
PCF11-204ENST00000530660 HOXD3P31249 432 aaPredicted RBP10.4□□□□□ -0.74
PCF11-204ENST00000530660 ECSCRQ19T08 205 aa10.4□□□□□ -0.74
PCF11-204ENST00000530660 IGKV3-7A0A075B6H7 116 aa10.4□□□□□ -0.74
PCF11-204ENST00000530660 TINCRA0A1B0GVN0 87 aa10.4□□□□□ -0.74
PCF11-204ENST00000530660 K7ENP7 123 aa10.4□□□□□ -0.74
PCF11-204ENST00000530660 ZNF625Q96I27 306 aaPredicted RBP10.4□□□□□ -0.74
PCF11-204ENST00000530660 CUL9Q8IWT3 2517 aa10.4□□□□□ -0.75
PCF11-204ENST00000530660 VSIG2Q96IQ7 327 aa10.4□□□□□ -0.75
PCF11-204ENST00000530660 FAM223BA6NKX1 122 aa10.39□□□□□ -0.75
PCF11-204ENST00000530660 CD28P10747 220 aa10.39□□□□□ -0.75
PCF11-204ENST00000530660 CCDC140Q96MF4 163 aa10.39□□□□□ -0.75
PCF11-204ENST00000530660 FAM104AQ969W3 186 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 C14orf132Q9NPU4 83 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 LINC00846Q9NV44 126 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 PTPRZ1P23471 2315 aaPredicted RBP10.38□□□□□ -0.75
PCF11-204ENST00000530660 INAFM2P0DMQ5 153 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 PLA2G2CQ5R387 149 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 ITLN2Q8WWU7 325 aaPredicted RBP10.38□□□□□ -0.75
PCF11-204ENST00000530660 LENEPQ9Y5L5 61 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 F8WDY8 70 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 MED14OSP0DP75 135 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 ZFHX3Q15911 3703 aa10.38□□□□□ -0.75
PCF11-204ENST00000530660 M0QY20 66 aa10.37□□□□□ -0.75
PCF11-204ENST00000530660 DNAL4O96015 105 aa10.37□□□□□ -0.75
PCF11-204ENST00000530660 MRPS36P82909 103 aaKnown RBP10.37□□□□□ -0.75
PCF11-204ENST00000530660 C9orf139Q6ZV77 190 aa10.37□□□□□ -0.75
PCF11-204ENST00000530660 AKAP6Q13023 2319 aa10.37□□□□□ -0.75
PCF11-204ENST00000530660 IGHV7-81A0A0B4J1V7 117 aa10.36□□□□□ -0.75
PCF11-204ENST00000530660 LY6HO94772 140 aa10.36□□□□□ -0.75
PCF11-204ENST00000530660 CIRBPQ14011 172 aaKnown RBP10.36□□□□□ -0.75
PCF11-204ENST00000530660 TRBV6-5A0A0K0K1A5 114 aa10.36□□□□□ -0.75
PCF11-204ENST00000530660 PIEZO2Q9H5I5 2752 aa10.36□□□□□ -0.75
PCF11-204ENST00000530660 SPTA1P02549 2419 aa10.36□□□□□ -0.75
PCF11-204ENST00000530660 HILS1P60008 231 aa10.36□□□□□ -0.75
PCF11-204ENST00000530660 SORL1Q92673 2214 aa10.36□□□□□ -0.75
PCF11-204ENST00000530660 PRIMA1Q86XR5 153 aa10.35□□□□□ -0.75
PCF11-204ENST00000530660 LINC00308Q8TCZ7 52 aa10.35□□□□□ -0.75
PCF11-204ENST00000530660 AKAP13Q12802 2813 aa10.35□□□□□ -0.75
PCF11-204ENST00000530660 G3V318 75 aa10.35□□□□□ -0.75
PCF11-204ENST00000530660 EDN2P20800 178 aa10.35□□□□□ -0.75
PCF11-204ENST00000530660 SOSTDC1Q6X4U4 206 aa10.34□□□□□ -0.75
PCF11-204ENST00000530660 WFDC11Q8NEX6 87 aa10.34□□□□□ -0.75
PCF11-204ENST00000530660 LY6G5BQ8NDX9 201 aa10.34□□□□□ -0.75
PCF11-204ENST00000530660 WFDC9Q8NEX5 89 aa10.33□□□□□ -0.76
PCF11-204ENST00000530660 TMEM243Q9BU79 118 aa10.33□□□□□ -0.76
PCF11-204ENST00000530660 BSNQ9UPA5 3926 aa10.33□□□□□ -0.76
PCF11-204ENST00000530660 Q6JHZ5 121 aa10.33□□□□□ -0.76
PCF11-204ENST00000530660 PRORYQ9H606 182 aa10.33□□□□□ -0.76
PCF11-204ENST00000530660 C20orf197Q8N268 126 aa10.32□□□□□ -0.76
PCF11-204ENST00000530660 FAM222AQ5U5X8 452 aa10.32□□□□□ -0.76
PCF11-204ENST00000530660 KLK9Q9UKQ9 250 aa10.32□□□□□ -0.76
PCF11-204ENST00000530660 U3KQE9 123 aa10.32□□□□□ -0.76
PCF11-204ENST00000530660 DOPEY2Q9Y3R5 2298 aa10.32□□□□□ -0.76
PCF11-204ENST00000530660 GVINP1Q7Z2Y8 2422 aa10.31□□□□□ -0.76
PCF11-204ENST00000530660 COL6A6A6NMZ7 2263 aa10.31□□□□□ -0.76
PCF11-204ENST00000530660 ODF3BA8MYP8 253 aa10.31□□□□□ -0.76
PCF11-204ENST00000530660 EP300Q09472 2414 aaPredicted RBP10.31□□□□□ -0.76
PCF11-204ENST00000530660 TRAV23DV6A0A075B6W5 121 aa10.31□□□□□ -0.76
PCF11-204ENST00000530660 ATP6V0E1O15342 81 aa10.31□□□□□ -0.76
PCF11-204ENST00000530660 TMEM86BQ8N661 226 aa10.31□□□□□ -0.76
PCF11-204ENST00000530660 CDKN2A-AS1Q9UH64 79 aa10.31□□□□□ -0.76
PCF11-204ENST00000530660 FAM236DA0A1B0GTK5 79 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 GHRHP01286 108 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 IGHG2P01859 326 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 FAM236CP0DP71 79 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 IGFL3Q6UXB1 125 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 Q8N6K4 173 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 DEFB124Q8NES8 71 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 C9orf85Q96MD7 179 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 UBE2D4Q9Y2X8 147 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 AVPP01185 164 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 TRBV12-3P01733 135 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 Q9H8V8 135 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 UNQ9165/PRO28630Q6UXU0 137 aa10.3□□□□□ -0.76
PCF11-204ENST00000530660 TIMM17BO60830 172 aa10.29□□□□□ -0.76
PCF11-204ENST00000530660 RPL28P46779 137 aaKnown RBP10.29□□□□□ -0.76
PCF11-204ENST00000530660 Q8N9W7 124 aa10.29□□□□□ -0.76
PCF11-204ENST00000530660 IGHV3-73A0A0B4J1V6 119 aa10.29□□□□□ -0.76
PCF11-204ENST00000530660 A0A0U1RQV1 116 aa10.29□□□□□ -0.76
PCF11-204ENST00000530660 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.29□□□□□ -0.76
PCF11-204ENST00000530660 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.29□□□□□ -0.76
PCF11-204ENST00000530660 FAM110DQ8TAY7 271 aaPredicted RBP10.29□□□□□ -0.76
PCF11-204ENST00000530660 SOCS3O14543 225 aa10.28□□□□□ -0.76
PCF11-204ENST00000530660 Q9UF83 564 aa10.28□□□□□ -0.76
PCF11-204ENST00000530660 NDUFA1O15239 70 aa10.27□□□□□ -0.76
PCF11-204ENST00000530660 NDUFC2O95298 119 aa10.27□□□□□ -0.76
PCF11-204ENST00000530660 SEC61GP60059 68 aa10.27□□□□□ -0.76
PCF11-204ENST00000530660 CELSR1Q9NYQ6 3014 aa10.27□□□□□ -0.77
PCF11-204ENST00000530660 NCR3O14931 201 aa10.27□□□□□ -0.77
PCF11-204ENST00000530660 PIK3CD-AS1Q5SR53 167 aa10.27□□□□□ -0.77
PCF11-204ENST00000530660 APRG1Q8IVJ8 170 aa10.27□□□□□ -0.77
PCF11-204ENST00000530660 PROK1P58294 105 aa10.27□□□□□ -0.77
PCF11-204ENST00000530660 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms