RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 UBE2D3P61077 147 aa15.45■□□□□ 0.06
VPS28-205ENST00000526204 UBE2D2P62837 147 aa15.45■□□□□ 0.06
VPS28-205ENST00000526204 SPANXA1Q9NS26 97 aa15.45■□□□□ 0.06
VPS28-205ENST00000526204 PTPN13Q12923 2485 aa15.45■□□□□ 0.06
VPS28-205ENST00000526204 Q6ZSV7 163 aa15.44■□□□□ 0.06
VPS28-205ENST00000526204 NAV2Q8IVL1 2488 aa15.44■□□□□ 0.06
VPS28-205ENST00000526204 LOC107984156A0A0G2JMH3 177 aa15.44■□□□□ 0.06
VPS28-205ENST00000526204 IGHV3-53P01767 116 aa15.44■□□□□ 0.06
VPS28-205ENST00000526204 ARL17AQ8IVW1 177 aa15.44■□□□□ 0.06
VPS28-205ENST00000526204 ETDBQ3ZM63 59 aa15.43■□□□□ 0.06
VPS28-205ENST00000526204 Q6ZSN1 163 aa15.43■□□□□ 0.06
VPS28-205ENST00000526204 C10orf126Q8N4M7 172 aa15.43■□□□□ 0.06
VPS28-205ENST00000526204 FAM104AQ969W3 186 aa15.43■□□□□ 0.06
VPS28-205ENST00000526204 ABCA12Q86UK0 2595 aa15.42■□□□□ 0.06
VPS28-205ENST00000526204 TMEM238C9JI98 176 aa15.42■□□□□ 0.06
VPS28-205ENST00000526204 CHCHD7Q9BUK0 85 aa15.42■□□□□ 0.06
VPS28-205ENST00000526204 PRO1854Q9UHT4 67 aa15.42■□□□□ 0.06
VPS28-205ENST00000526204 TENM4Q6N022 2769 aa15.42■□□□□ 0.06
VPS28-205ENST00000526204 SH2D6Q7Z4S9 175 aa15.41■□□□□ 0.06
VPS28-205ENST00000526204 TIMM21Q9BVV7 248 aa15.41■□□□□ 0.06
VPS28-205ENST00000526204 TRBV20-1A0A075B6N2 111 aa15.41■□□□□ 0.06
VPS28-205ENST00000526204 IGHV3-64A0A075B6Q5 118 aa15.41■□□□□ 0.06
VPS28-205ENST00000526204 RS1O15537 224 aa15.41■□□□□ 0.06
VPS28-205ENST00000526204 UBE2D4Q9Y2X8 147 aa15.41■□□□□ 0.06
VPS28-205ENST00000526204 IGHV3-30-3P0DP02 117 aa15.4■□□□□ 0.06
VPS28-205ENST00000526204 PSMB2P49721 201 aa15.4■□□□□ 0.06
VPS28-205ENST00000526204 NBPF19A0A087WUL8 3843 aa15.4■□□□□ 0.06
VPS28-205ENST00000526204 TINCRA0A1B0GVN0 87 aa15.4■□□□□ 0.06
VPS28-205ENST00000526204 KMT2BQ9UMN6 2715 aaPredicted RBP15.39■□□□□ 0.05
VPS28-205ENST00000526204 DNAJC9-AS1A6NH13 148 aa15.39■□□□□ 0.05
VPS28-205ENST00000526204 ODF3L2Q3SX64 289 aa15.39■□□□□ 0.05
VPS28-205ENST00000526204 CEMP1Q6PRD7 247 aaPredicted RBP15.39■□□□□ 0.05
VPS28-205ENST00000526204 STHQ8IWL8 128 aa15.39■□□□□ 0.05
VPS28-205ENST00000526204 Q9UF83 564 aa15.39■□□□□ 0.05
VPS28-205ENST00000526204 MTURNQ8N3F0 131 aa15.38■□□□□ 0.05
VPS28-205ENST00000526204 A4D1N5 150 aa15.38■□□□□ 0.05
VPS28-205ENST00000526204 FHL3Q13643 280 aa15.38■□□□□ 0.05
VPS28-205ENST00000526204 XCL2Q9UBD3 114 aa15.37■□□□□ 0.05
VPS28-205ENST00000526204 TEX15Q9BXT5 2789 aa15.37■□□□□ 0.05
VPS28-205ENST00000526204 IGHV1-58A0A0C4DH39 117 aa15.37■□□□□ 0.05
VPS28-205ENST00000526204 A0A0J9YXY3 114 aa15.37■□□□□ 0.05
VPS28-205ENST00000526204 SFTA2Q6UW10 78 aa15.37■□□□□ 0.05
VPS28-205ENST00000526204 ATP6V0E2Q8NHE4 81 aa15.37■□□□□ 0.05
VPS28-205ENST00000526204 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.36■□□□□ 0.05
VPS28-205ENST00000526204 A0A0B4J2C4 111 aa15.36■□□□□ 0.05
VPS28-205ENST00000526204 CCL24O00175 119 aa15.35■□□□□ 0.05
VPS28-205ENST00000526204 MUSTN1Q8IVN3 82 aa15.35■□□□□ 0.05
VPS28-205ENST00000526204 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.35■□□□□ 0.05
VPS28-205ENST00000526204 IGKV2-29A2NJV5 120 aaPredicted RBP15.35■□□□□ 0.05
VPS28-205ENST00000526204 APCP25054 2843 aa15.35■□□□□ 0.05
VPS28-205ENST00000526204 HIST2H2BDQ6DRA6 164 aa15.34■□□□□ 0.05
VPS28-205ENST00000526204 AZU1P20160 251 aa15.34■□□□□ 0.05
VPS28-205ENST00000526204 RNASE13Q5GAN3 156 aaKnown RBP15.34■□□□□ 0.05
VPS28-205ENST00000526204 SCGB1C2P0DMR2 95 aa15.33■□□□□ 0.04
VPS28-205ENST00000526204 C1orf158Q8N1D5 194 aa15.33■□□□□ 0.04
VPS28-205ENST00000526204 WFDC11Q8NEX6 87 aa15.33■□□□□ 0.04
VPS28-205ENST00000526204 IL17DQ8TAD2 202 aa15.33■□□□□ 0.04
VPS28-205ENST00000526204 TMEM263Q8WUH6 116 aaKnown RBP15.33■□□□□ 0.04
VPS28-205ENST00000526204 VSIG2Q96IQ7 327 aa15.33■□□□□ 0.04
VPS28-205ENST00000526204 C1QTNF4Q9BXJ3 329 aa15.33■□□□□ 0.04
VPS28-205ENST00000526204 TCL1BO95988 128 aa15.32■□□□□ 0.04
VPS28-205ENST00000526204 SMCPP49901 116 aaPredicted RBP15.32■□□□□ 0.04
VPS28-205ENST00000526204 Q6ZUT4 128 aa15.32■□□□□ 0.04
VPS28-205ENST00000526204 TRAV8-3A0A0A6YYJ7 113 aa15.32■□□□□ 0.04
VPS28-205ENST00000526204 IGHV3-38A0A0C4DH36 116 aa15.32■□□□□ 0.04
VPS28-205ENST00000526204 A0A1W2PRX2 142 aa15.32■□□□□ 0.04
VPS28-205ENST00000526204 GAGE12HA6NDE8 117 aa15.32■□□□□ 0.04
VPS28-205ENST00000526204 IGHV3-33P01772 117 aa15.32■□□□□ 0.04
VPS28-205ENST00000526204 GEMIN7Q9H840 131 aaKnown RBP15.32■□□□□ 0.04
VPS28-205ENST00000526204 ERG28Q9UKR5 140 aa15.32■□□□□ 0.04
VPS28-205ENST00000526204 TSSC4Q9Y5U2 329 aaPredicted RBP15.32■□□□□ 0.04
VPS28-205ENST00000526204 NACAE9PAV3 2078 aa15.31■□□□□ 0.04
VPS28-205ENST00000526204 NDUFA12Q9UI09 145 aa15.31■□□□□ 0.04
VPS28-205ENST00000526204 SIGMAR1Q99720 223 aa15.31■□□□□ 0.04
VPS28-205ENST00000526204 IGHV3OR16-12A0A075B7B8 117 aa15.3■□□□□ 0.04
VPS28-205ENST00000526204 MYO9AB2RTY4 2548 aa15.3■□□□□ 0.04
VPS28-205ENST00000526204 CMC4P56277 68 aaPredicted RBP15.3■□□□□ 0.04
VPS28-205ENST00000526204 C11orf44Q8N8P7 122 aa15.3■□□□□ 0.04
VPS28-205ENST00000526204 ZNF418Q8TF45 676 aaPredicted RBP15.3■□□□□ 0.04
VPS28-205ENST00000526204 LITAFQ99732 161 aa15.3■□□□□ 0.04
VPS28-205ENST00000526204 SPATA25Q9BR10 227 aa15.3■□□□□ 0.04
VPS28-205ENST00000526204 TRGV1A0A0A0MS02 117 aa15.29■□□□□ 0.04
VPS28-205ENST00000526204 FOXI1Q12951 378 aa15.29■□□□□ 0.04
VPS28-205ENST00000526204 SPANXDQ9BXN6 97 aa15.29■□□□□ 0.04
VPS28-205ENST00000526204 ESM1Q9NQ30 184 aa15.29■□□□□ 0.04
VPS28-205ENST00000526204 SPANXCQ9NY87 97 aa15.29■□□□□ 0.04
VPS28-205ENST00000526204 TIRAPP58753 221 aa15.29■□□□□ 0.04
VPS28-205ENST00000526204 DGAT2L7PQ6IED9 249 aa15.29■□□□□ 0.04
VPS28-205ENST00000526204 TRBV10-1A0A0K0K1A3 114 aa15.28■□□□□ 0.04
VPS28-205ENST00000526204 ADARB2-AS1A8MUL3 147 aa15.28■□□□□ 0.04
VPS28-205ENST00000526204 EIF4EBP3O60516 100 aaPredicted RBP15.28■□□□□ 0.04
VPS28-205ENST00000526204 SBSPONQ8IVN8 264 aa15.28■□□□□ 0.04
VPS28-205ENST00000526204 SPINK8P0C7L1 97 aa15.27■□□□□ 0.04
VPS28-205ENST00000526204 IGLV5-45A0A087WSX0 123 aa15.26■□□□□ 0.03
VPS28-205ENST00000526204 INSL3P51460 131 aa15.26■□□□□ 0.03
VPS28-205ENST00000526204 RPL36AP83881 106 aaKnown RBP15.26■□□□□ 0.03
VPS28-205ENST00000526204 ZFAND6Q6FIF0 208 aa15.26■□□□□ 0.03
VPS28-205ENST00000526204 RPL36ALQ969Q0 106 aaKnown RBP15.26■□□□□ 0.03
VPS28-205ENST00000526204 ZNF469Q96JG9 3925 aaPredicted RBP15.26■□□□□ 0.03
VPS28-205ENST00000526204 PRSS2P07478 247 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms