RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 GTSF1Q8WW33 167 aa4.32□□□□□ -1.72
CD44-221ENST00000526000 KLK12Q9UKR0 248 aa4.32□□□□□ -1.72
CD44-221ENST00000526000 TRAV8-3A0A0A6YYJ7 113 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 TRBV10-1A0A0K0K1A3 114 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 TRBV6-4A0A1B0GX49 114 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 C7orf77A4D0Y5 90 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 H7C1H1 209 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 M0R381 172 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 GZMBP10144 247 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 NTF3P20783 257 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 Q6ZSA8 131 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 C14orf178Q8N769 122 aaPredicted RBP4.31□□□□□ -1.72
CD44-221ENST00000526000 NUP35Q8NFH5 326 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 OR10AG1Q8NH19 301 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 CIRBP-AS1Q8TBR5 109 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 UBE2WQ96B02 151 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 TPPP3Q9BW30 176 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 TMEM191AQ9H0A3 160 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 DPH3P1Q9H4G8 78 aa4.31□□□□□ -1.72
CD44-221ENST00000526000 S100A1P23297 94 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 HNRNPA3P51991 378 aaKnown RBP4.3□□□□□ -1.72
CD44-221ENST00000526000 KRTAP10-4P60372 401 aaPredicted RBP4.3□□□□□ -1.72
CD44-221ENST00000526000 RAB4BP61018 213 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 HBBP68871 147 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 TWIST1Q15672 202 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 UFSP1Q6NVU6 142 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 SLC7A5P1Q8MH63 180 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 GATD1Q8NB37 220 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 PGLYRP4Q96LB8 373 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 CHAC1Q9BUX1 264 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 RPS10P5Q9NQ39 176 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 DNAH8Q96JB1 4490 aa4.3□□□□□ -1.72
CD44-221ENST00000526000 TMEM262E9PQX1 116 aa4.29□□□□□ -1.72
CD44-221ENST00000526000 PPP1R17O96001 155 aa4.29□□□□□ -1.72
CD44-221ENST00000526000 Q8N976 141 aa4.29□□□□□ -1.72
CD44-221ENST00000526000 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.29□□□□□ -1.72
CD44-221ENST00000526000 KIF25-AS1Q9Y6Z4 181 aa4.29□□□□□ -1.72
CD44-221ENST00000526000 TRBV24-1A0A075B6N3 115 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 A0A087WWL8 130 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 A0A1B0GXF2 115 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 OXTP01178 125 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 PPBPP02775 128 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 MT-ND6P03923 174 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 RPL37AP61513 92 aaKnown RBP4.28□□□□□ -1.72
CD44-221ENST00000526000 LAGE3Q14657 143 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 FAM74A4Q5TZK3 123 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 FAM104BQ5XKR9 115 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 NIT1Q86X76 327 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 MRAP2Q96G30 205 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 SMCO4Q9NRQ5 59 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 URGCP-MRPS24S4R325 110 aa4.28□□□□□ -1.72
CD44-221ENST00000526000 LRP1Q07954 4544 aaKnown RBP4.27□□□□□ -1.73
CD44-221ENST00000526000 A0A087WX48 190 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 F5H697 171 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 PHOX2AO14813 284 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 HLA-DQA1P01909 254 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 SSTP61278 116 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 RPL36AP83881 106 aaKnown RBP4.27□□□□□ -1.73
CD44-221ENST00000526000 ZNF56Q15929 161 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 TMEM97Q5BJF2 176 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 MRPL54Q6P161 138 aaKnown RBP4.27□□□□□ -1.73
CD44-221ENST00000526000 RPL36ALQ969Q0 106 aaKnown RBP4.27□□□□□ -1.73
CD44-221ENST00000526000 RMI2Q96E14 147 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 DPH3Q96FX2 82 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 GNB1LQ9BYB4 327 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 LAMTOR2Q9Y2Q5 125 aa4.27□□□□□ -1.73
CD44-221ENST00000526000 TRBV7-3A0A075B6L6 115 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 MUC21A0A0G2JKD1 596 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 MUC21A0A140T8X8 626 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 M0QY20 66 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 TCAPO15273 167 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 MGPP08493 103 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 CAMPP49913 170 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 NIT2Q9NQR4 276 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 COX11Q9Y6N1 276 aa4.26□□□□□ -1.73
CD44-221ENST00000526000 TRBV6-5A0A0K0K1A5 114 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 USP17L23D6RBM5 183 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 PANO1I0J062 215 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 PRSS1P07477 247 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 LINC00694P0DN24 101 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 RAB4AP20338 218 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 PKIAP61925 76 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 RPL32P62910 135 aaKnown RBP4.25□□□□□ -1.73
CD44-221ENST00000526000 ODF1Q14990 250 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 ELOBQ15370 118 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 SUMO4Q6EEV6 95 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 CLPSL2Q6UWE3 100 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 ENHOQ6UWT2 76 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 C20orf78Q9BR46 151 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 C1orf43Q9BWL3 253 aa4.25□□□□□ -1.73
CD44-221ENST00000526000 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.25□□□□□ -1.73
CD44-221ENST00000526000 ATP6V1G1O75348 118 aa4.24□□□□□ -1.73
CD44-221ENST00000526000 NCR2O95944 276 aa4.24□□□□□ -1.73
CD44-221ENST00000526000 ANGP03950 147 aaKnown RBP4.24□□□□□ -1.73
CD44-221ENST00000526000 CKS2P33552 79 aa4.24□□□□□ -1.73
CD44-221ENST00000526000 UBE2D3P61077 147 aa4.24□□□□□ -1.73
CD44-221ENST00000526000 UBE2D2P62837 147 aa4.24□□□□□ -1.73
CD44-221ENST00000526000 MRPL51Q4U2R6 128 aaKnown RBP4.24□□□□□ -1.73
CD44-221ENST00000526000 ATRAIDQ6UW56 229 aa4.24□□□□□ -1.73
CD44-221ENST00000526000 TMEM136Q6ZRR5 245 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms