RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 PITX3O75364 302 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 SULT1C4O75897 302 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 DBIP07108 87 aaKnown RBP0.32□□□□□ -2.36
CD44-215ENST00000525241 EVI2AP22794 236 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 KDELR1P24390 212 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 PCBD1P61457 104 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 PLGLB1Q02325 96 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 KRTAP19-6Q3LI70 58 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 OR8J3Q8NGG0 315 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 SMIM7Q9BQ49 75 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 AIF1LQ9BQI0 150 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 MRPL36Q9P0J6 103 aaKnown RBP0.32□□□□□ -2.36
CD44-215ENST00000525241 LSM2Q9Y333 95 aaKnown RBP0.32□□□□□ -2.36
CD44-215ENST00000525241 NRXN2Q9P2S2 1712 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 KIAA0556O60303 1618 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 AHCTF1Q8WYP5 2266 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 DOCK11Q5JSL3 2073 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 FAT2Q9NYQ8 4349 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 A0A096LNT2 108 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 A0A0G2JMM0 328 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 BBIP1A8MTZ0 92 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 M0R2P5 195 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 TPST1O60507 370 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 CAV3P56539 151 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 RPL37P61927 97 aaKnown RBP0.31□□□□□ -2.36
CD44-215ENST00000525241 LSM3P62310 102 aaKnown RBP0.31□□□□□ -2.36
CD44-215ENST00000525241 SPINK9Q5DT21 86 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 Q6ZS92 163 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 SMR3AQ99954 134 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 FAM103A1Q9BTL3 118 aaKnown RBP0.31□□□□□ -2.36
CD44-215ENST00000525241 GSKIPQ9P0R6 139 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 TNCP24821 2201 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 TRRAPQ9Y4A5 3859 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 ANK3Q12955 4377 aaKnown RBP0.31□□□□□ -2.36
CD44-215ENST00000525241 PLECQ15149 4684 aaKnown RBP0.31□□□□□ -2.36
CD44-215ENST00000525241 RB1CC1Q8TDY2 1594 aa0.31□□□□□ -2.36
CD44-215ENST00000525241 FAM135AQ9P2D6 1515 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 TRBV10-1A0A0K0K1A3 114 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 HIGD1CA8MV81 97 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 LY6G6CO95867 125 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 IGLC6P0CF74 106 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 CMPK1P30085 196 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 CKS1BP61024 79 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 HIST1H1AQ02539 215 aaPredicted RBP0.3□□□□□ -2.36
CD44-215ENST00000525241 ATP11AUNQ6ZP68 121 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 IDO2Q6ZQW0 420 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 SLC25A26Q70HW3 274 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 Q86TA4 180 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 DIP2BQ9P265 1576 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 CEP170BQ9Y4F5 1589 aaPredicted RBP0.3□□□□□ -2.36
CD44-215ENST00000525241 CCDC171Q6TFL3 1326 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 FAT1Q14517 4588 aa0.3□□□□□ -2.36
CD44-215ENST00000525241 SPEF2Q9C093 1822 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 KNL1Q8NG31 2342 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 MAP3K4Q9Y6R4 1608 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 TRAV2A0A0B4J234 112 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 FAM236AA0A1B0GUQ0 79 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 FAM236BA0A1B0GV22 79 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 MPC1LP0DKB6 136 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 IL7P13232 177 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 OR2T2Q6IF00 324 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 ATP6V0E2Q8NHE4 81 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 PPDPFLQ8WWR9 84 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 MAGOHBQ96A72 148 aaKnown RBP0.29□□□□□ -2.36
CD44-215ENST00000525241 TAS2R8Q9NYW2 309 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 DISP2A7MBM2 1401 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 MYOM3Q5VTT5 1437 aa0.29□□□□□ -2.36
CD44-215ENST00000525241 PKHD1L1Q86WI1 4243 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 LYSTQ99698 3801 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 TRBV20-1A0A075B6N2 111 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 SMIM24O75264 130 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 NCR2O95944 276 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 LINC00694P0DN24 101 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 SPINT3P49223 89 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 KLKP1Q107X0 134 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 CLLU1Q5K131 121 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 ATG5Q9H1Y0 275 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 BATF3Q9NR55 127 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 CALML5Q9NZT1 146 aa0.28□□□□□ -2.36
CD44-215ENST00000525241 TJP1Q07157 1748 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 A0A087WTM6 91 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 ZNF137PP52743 207 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 ZNF56Q15929 161 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 SMIM21Q3B7S5 101 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 SNX29P2Q8IUI4 249 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 KIAA0586Q9BVV6 1533 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 DNAH5Q8TE73 4624 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 PREX1Q8TCU6 1659 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 PATJQ8NI35 1801 aa0.27□□□□□ -2.37
CD44-215ENST00000525241 MYH8P13535 1937 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 APOBP04114 4563 aaKnown RBP0.26□□□□□ -2.37
CD44-215ENST00000525241 TFF1P04155 84 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 CCKP06307 115 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 SLC25A6P12236 298 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 MT4P47944 62 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 POLR2JP52435 117 aaKnown RBP0.26□□□□□ -2.37
CD44-215ENST00000525241 EMX2Q04743 252 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 DYNLRB2Q8TF09 96 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 ANP32BQ92688 251 aaKnown RBP0.26□□□□□ -2.37
CD44-215ENST00000525241 NOP16Q9Y3C1 178 aaKnown RBP0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms