RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 RBMY1CP0DJD4 496 aa10.49□□□□□ -0.73
LIG1-202ENST00000427526 RBMY1FQ15415 496 aaKnown RBP10.49□□□□□ -0.73
LIG1-202ENST00000427526 C18orf65Q6ZTR6 163 aa10.49□□□□□ -0.73
LIG1-202ENST00000427526 HIST2H2BDQ6DRA6 164 aa10.48□□□□□ -0.73
LIG1-202ENST00000427526 TMEM223A0PJW6 202 aa10.48□□□□□ -0.73
LIG1-202ENST00000427526 CFAP126Q5VTH2 177 aa10.48□□□□□ -0.73
LIG1-202ENST00000427526 MYO9AB2RTY4 2548 aa10.48□□□□□ -0.73
LIG1-202ENST00000427526 TRGV11A0A075B6L2 103 aa10.47□□□□□ -0.73
LIG1-202ENST00000427526 CFC1BP0CG36 223 aa10.47□□□□□ -0.73
LIG1-202ENST00000427526 CFC1P0CG37 223 aa10.47□□□□□ -0.73
LIG1-202ENST00000427526 DLX4Q92988 240 aaPredicted RBP10.47□□□□□ -0.73
LIG1-202ENST00000427526 EDA2RQ9HAV5 297 aa10.47□□□□□ -0.73
LIG1-202ENST00000427526 APOMO95445 188 aa10.47□□□□□ -0.73
LIG1-202ENST00000427526 SMCPP49901 116 aaPredicted RBP10.47□□□□□ -0.73
LIG1-202ENST00000427526 ACANP16112 2415 aa10.47□□□□□ -0.73
LIG1-202ENST00000427526 DEFB136Q30KP8 78 aa10.47□□□□□ -0.73
LIG1-202ENST00000427526 XGP55808 180 aa10.46□□□□□ -0.73
LIG1-202ENST00000427526 Q6ZUT4 128 aa10.46□□□□□ -0.73
LIG1-202ENST00000427526 IGLV4-3A0A075B6K6 122 aa10.46□□□□□ -0.74
LIG1-202ENST00000427526 LEPROTO15243 131 aa10.46□□□□□ -0.74
LIG1-202ENST00000427526 A8MTW9 85 aa10.45□□□□□ -0.74
LIG1-202ENST00000427526 ZNF22P17026 224 aaPredicted RBP10.45□□□□□ -0.74
LIG1-202ENST00000427526 LGALS3P17931 250 aaKnown RBP10.45□□□□□ -0.74
LIG1-202ENST00000427526 Q8N2B8 174 aa10.45□□□□□ -0.74
LIG1-202ENST00000427526 RHODO00212 210 aa10.45□□□□□ -0.74
LIG1-202ENST00000427526 NHLRC4P0CG21 123 aaPredicted RBP10.45□□□□□ -0.74
LIG1-202ENST00000427526 FAM104AQ969W3 186 aa10.45□□□□□ -0.74
LIG1-202ENST00000427526 SORL1Q92673 2214 aa10.45□□□□□ -0.74
LIG1-202ENST00000427526 LOC107984156A0A0G2JMH3 177 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 KNCNA6PVL3 124 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 SFTA2Q6UW10 78 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 ARL17AQ8IVW1 177 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 KRTAP1-1Q07627 177 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 PSMB2P49721 201 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 C10orf126Q8N4M7 172 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 DUX3Q96PT4 197 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 VCX2Q9H322 139 aa10.44□□□□□ -0.74
LIG1-202ENST00000427526 UNC79Q9P2D8 2635 aa10.43□□□□□ -0.74
LIG1-202ENST00000427526 A0A0J9YXV3 536 aa10.43□□□□□ -0.74
LIG1-202ENST00000427526 M0QXV9 152 aa10.43□□□□□ -0.74
LIG1-202ENST00000427526 FHL3Q13643 280 aa10.43□□□□□ -0.74
LIG1-202ENST00000427526 PYGO1Q9Y3Y4 419 aa10.43□□□□□ -0.74
LIG1-202ENST00000427526 SLURP1P55000 103 aa10.43□□□□□ -0.74
LIG1-202ENST00000427526 PROK1P58294 105 aa10.43□□□□□ -0.74
LIG1-202ENST00000427526 DNAJC9-AS1A6NH13 148 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 H3BMM0 161 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 DEFB131AP59861 70 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 ATP6V0E2Q8NHE4 81 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 PRO1854Q9UHT4 67 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 RBMY1BA6NDE4 496 aaKnown RBP10.42□□□□□ -0.74
LIG1-202ENST00000427526 RBMY1EA6NEQ0 496 aaKnown RBP10.42□□□□□ -0.74
LIG1-202ENST00000427526 RBMY1DP0C7P1 496 aaKnown RBP10.42□□□□□ -0.74
LIG1-202ENST00000427526 Q6ZSV7 163 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 ESM1Q9NQ30 184 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 NF1P21359 2839 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 EIF4EBP3O60516 100 aaPredicted RBP10.42□□□□□ -0.74
LIG1-202ENST00000427526 HTN1P15515 57 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 FOXI1Q12951 378 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 KHDC1LQ5JSQ8 128 aa10.42□□□□□ -0.74
LIG1-202ENST00000427526 IGHV3-73A0A0B4J1V6 119 aa10.41□□□□□ -0.74
LIG1-202ENST00000427526 TCL1BO95988 128 aa10.41□□□□□ -0.74
LIG1-202ENST00000427526 PRM2P04554 102 aa10.41□□□□□ -0.74
LIG1-202ENST00000427526 LYRM7Q5U5X0 104 aa10.41□□□□□ -0.74
LIG1-202ENST00000427526 PPDPFQ9H3Y8 114 aa10.41□□□□□ -0.74
LIG1-202ENST00000427526 CUBNO60494 3623 aa10.41□□□□□ -0.74
LIG1-202ENST00000427526 CCDC179H3BU77 68 aa10.41□□□□□ -0.74
LIG1-202ENST00000427526 TRBV20-1A0A075B6N2 111 aa10.4□□□□□ -0.74
LIG1-202ENST00000427526 PIK3CD-AS1Q5SR53 167 aa10.4□□□□□ -0.74
LIG1-202ENST00000427526 IGHV3-64A0A075B6Q5 118 aa10.4□□□□□ -0.74
LIG1-202ENST00000427526 A4D1N5 150 aa10.4□□□□□ -0.74
LIG1-202ENST00000427526 MRPS36P82909 103 aaKnown RBP10.4□□□□□ -0.74
LIG1-202ENST00000427526 Q9UF83 564 aa10.4□□□□□ -0.74
LIG1-202ENST00000427526 GCN1Q92616 2671 aaKnown RBP10.39□□□□□ -0.75
LIG1-202ENST00000427526 TRAV2A0A0B4J234 112 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 M0R2P5 195 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 SBSPONQ8IVN8 264 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 TMEM86BQ8N661 226 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 GAGE12JA6NER3 117 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 A8MWV9 139 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 GAGE7O76087 117 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 GAGE12FP0CL80 117 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 GAGE12GP0CL81 117 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 GAGE12IP0CL82 117 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 GAGE4Q13068 117 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 Q6ZSN1 163 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 FASNP49327 2511 aaKnown RBP10.39□□□□□ -0.75
LIG1-202ENST00000427526 ZFAND6Q6FIF0 208 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 C11orf44Q8N8P7 122 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 TMEM263Q8WUH6 116 aaKnown RBP10.39□□□□□ -0.75
LIG1-202ENST00000427526 PTH2Q96A98 100 aa10.39□□□□□ -0.75
LIG1-202ENST00000427526 CEMP1Q6PRD7 247 aaPredicted RBP10.38□□□□□ -0.75
LIG1-202ENST00000427526 MUSTN1Q8IVN3 82 aa10.38□□□□□ -0.75
LIG1-202ENST00000427526 TMEM61Q8N0U2 210 aa10.38□□□□□ -0.75
LIG1-202ENST00000427526 TEX29Q8N6K0 151 aa10.38□□□□□ -0.75
LIG1-202ENST00000427526 HECTD1Q9ULT8 2610 aa10.38□□□□□ -0.75
LIG1-202ENST00000427526 IGHV3-30-3P0DP02 117 aa10.38□□□□□ -0.75
LIG1-202ENST00000427526 CD28P10747 220 aa10.38□□□□□ -0.75
LIG1-202ENST00000427526 MTORP42345 2549 aa10.38□□□□□ -0.75
LIG1-202ENST00000427526 A0A0J9YXY3 114 aa10.37□□□□□ -0.75
LIG1-202ENST00000427526 IGHV3-33P01772 117 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms