RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 RHOHQ15669 191 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 DAND5Q8N907 189 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 CLEC2BQ92478 149 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 FBN2P35556 2912 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 A0A0J9YX75 114 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 A6NDX4 124 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 I3L3M4 83 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 RBMY1A1P0DJD3 496 aaKnown RBP13.55□□□□□ -0.24
CCDC3-201ENST00000378825 RBMY1CP0DJD4 496 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 RBMY1FQ15415 496 aaKnown RBP13.55□□□□□ -0.24
CCDC3-201ENST00000378825 ODF3Q96PU9 254 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 IGHV1OR15-1A0A075B7D0 117 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 CD28P10747 220 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 ZNF462Q96JM2 2506 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 ATXN8Q156A1 80 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 TIMM21Q9BVV7 248 aa13.55□□□□□ -0.24
CCDC3-201ENST00000378825 MAPK1IP1LQ8NDC0 245 aa13.54□□□□□ -0.24
CCDC3-201ENST00000378825 ANKRD17O75179 2603 aaKnown RBP13.54□□□□□ -0.24
CCDC3-201ENST00000378825 C2CD3Q4AC94 2353 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 NOTCH3Q9UM47 2321 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 ABCA12Q86UK0 2595 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 SNCGO76070 127 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 GAGE2BQ13066 116 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 GAGE2EQ4V326 116 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 GAGE2DQ9UEU5 116 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 CCDC179H3BU77 68 aa13.53□□□□□ -0.24
CCDC3-201ENST00000378825 MXRA5Q9NR99 2828 aa13.52□□□□□ -0.24
CCDC3-201ENST00000378825 MSMBP08118 114 aa13.52□□□□□ -0.24
CCDC3-201ENST00000378825 PTPN13Q12923 2485 aa13.52□□□□□ -0.25
CCDC3-201ENST00000378825 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.51□□□□□ -0.25
CCDC3-201ENST00000378825 H7C423 109 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 NDUFV3P56181 108 aaKnown RBP13.51□□□□□ -0.25
CCDC3-201ENST00000378825 Q6ZSN1 163 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 NDUFA12Q9UI09 145 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 BRI3O95415 125 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 CFHR3Q02985 330 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 TTC32Q5I0X7 151 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 ICOSQ9Y6W8 199 aa13.51□□□□□ -0.25
CCDC3-201ENST00000378825 TRBV10-2A0A0K0K1G8 114 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 H3BUA1 57 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 C15orf53Q8NAA6 179 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.5□□□□□ -0.25
CCDC3-201ENST00000378825 TRBV30A0A0K0K1B3 111 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 IGKV2-29A2NJV5 120 aaPredicted RBP13.5□□□□□ -0.25
CCDC3-201ENST00000378825 SYNJ2BPP57105 145 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 GAGE5Q13069 117 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 GAGE6Q13070 117 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 C2orf82Q6UX34 121 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 SVIPQ8NHG7 77 aa13.5□□□□□ -0.25
CCDC3-201ENST00000378825 TRAV8-4A0A0B4J246 113 aa13.49□□□□□ -0.25
CCDC3-201ENST00000378825 IGHV3-38A0A0C4DH36 116 aa13.49□□□□□ -0.25
CCDC3-201ENST00000378825 DUX3Q96PT4 197 aa13.49□□□□□ -0.25
CCDC3-201ENST00000378825 H3BMM0 161 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 K7EQG2 157 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 UBE2WQ96B02 151 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 K7EMT4 169 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 MRPS36P82909 103 aaKnown RBP13.48□□□□□ -0.25
CCDC3-201ENST00000378825 M0QXV9 152 aa13.48□□□□□ -0.25
CCDC3-201ENST00000378825 SNRPD3P62318 126 aaKnown RBP13.48□□□□□ -0.25
CCDC3-201ENST00000378825 IGHV1-58A0A0C4DH39 117 aa13.47□□□□□ -0.25
CCDC3-201ENST00000378825 A0A0U1RRA0 63 aa13.47□□□□□ -0.25
CCDC3-201ENST00000378825 PRB1P04280 392 aa13.47□□□□□ -0.25
CCDC3-201ENST00000378825 USP24Q9UPU5 2620 aa13.46□□□□□ -0.25
CCDC3-201ENST00000378825 IGHV4-59P01825 116 aa13.46□□□□□ -0.25
CCDC3-201ENST00000378825 PSMB8P28062 276 aa13.46□□□□□ -0.25
CCDC3-201ENST00000378825 TLN2Q9Y4G6 2542 aa13.46□□□□□ -0.26
CCDC3-201ENST00000378825 RPL13AP40429 203 aaKnown RBP13.46□□□□□ -0.26
CCDC3-201ENST00000378825 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.45□□□□□ -0.26
CCDC3-201ENST00000378825 VSIG2Q96IQ7 327 aa13.45□□□□□ -0.26
CCDC3-201ENST00000378825 AKAP9Q99996 3911 aa13.45□□□□□ -0.26
CCDC3-201ENST00000378825 MYO9AB2RTY4 2548 aa13.45□□□□□ -0.26
CCDC3-201ENST00000378825 MIAQ16674 131 aa13.44□□□□□ -0.26
CCDC3-201ENST00000378825 ZNF625Q96I27 306 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-201ENST00000378825 IFITM1P13164 125 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 DEFB112Q30KQ8 113 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 HIST2H2BDQ6DRA6 164 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 LINC00467Q9BRT7 94 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 CHCHD7Q9BUK0 85 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 NAV2Q8IVL1 2488 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 B4DSR2 109 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 CDKN2A-AS1Q9UH64 79 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 TEX15Q9BXT5 2789 aa13.43□□□□□ -0.26
CCDC3-201ENST00000378825 TMEM61Q8N0U2 210 aa13.42□□□□□ -0.26
CCDC3-201ENST00000378825 TNFRSF18Q9Y5U5 241 aa13.42□□□□□ -0.26
CCDC3-201ENST00000378825 UBE2D4Q9Y2X8 147 aa13.42□□□□□ -0.26
CCDC3-201ENST00000378825 PYGO1Q9Y3Y4 419 aa13.42□□□□□ -0.26
CCDC3-201ENST00000378825 SPANXDQ9BXN6 97 aa13.41□□□□□ -0.26
CCDC3-201ENST00000378825 SPANXCQ9NY87 97 aa13.41□□□□□ -0.26
CCDC3-201ENST00000378825 C3orf56Q8N813 242 aa13.41□□□□□ -0.26
CCDC3-201ENST00000378825 RBMY1BA6NDE4 496 aaKnown RBP13.4□□□□□ -0.26
CCDC3-201ENST00000378825 RBMY1EA6NEQ0 496 aaKnown RBP13.4□□□□□ -0.26
CCDC3-201ENST00000378825 RBMY1DP0C7P1 496 aaKnown RBP13.4□□□□□ -0.26
CCDC3-201ENST00000378825 GAGE12JA6NER3 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE7O76087 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE12FP0CL80 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE12GP0CL81 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE12IP0CL82 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 GAGE4Q13068 117 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 DEFB136Q30KP8 78 aa13.4□□□□□ -0.27
CCDC3-201ENST00000378825 NDUFA7O95182 113 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms