RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TP73-AS1Q9UF72 201 aa9.77□□□□□ -0.85
PTPRF-202ENST00000372405 A0A087WX48 190 aa9.76□□□□□ -0.85
PTPRF-202ENST00000372405 DEFB130BP0DP73 79 aa9.76□□□□□ -0.85
PTPRF-202ENST00000372405 DEFB130AP0DP74 79 aa9.76□□□□□ -0.85
PTPRF-202ENST00000372405 G0S2P27469 103 aa9.76□□□□□ -0.85
PTPRF-202ENST00000372405 FHL2Q14192 279 aa9.76□□□□□ -0.85
PTPRF-202ENST00000372405 Q8NAQ8 132 aa9.76□□□□□ -0.85
PTPRF-202ENST00000372405 RNF183Q96D59 192 aa9.76□□□□□ -0.85
PTPRF-202ENST00000372405 TRBV7-3A0A075B6L6 115 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 TRAV12-1A0A0B4J245 112 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 IGHV4-28A0A0C4DH34 117 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 TRBV10-1A0A0K0K1A3 114 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 EREGO14944 169 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 ZC2HC1BQ5TFG8 222 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 STPG4Q8N801 248 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 CHCHD7Q9BUK0 85 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 HHLA3Q9XRX5 114 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 LOC100131303A0A0U1RQF7 123 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 ANKRD39Q53RE8 183 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 FAM222AQ5U5X8 452 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 TIMM17AQ99595 171 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 NBEAL1Q6ZS30 2694 aa9.75□□□□□ -0.85
PTPRF-202ENST00000372405 TRBV6-4A0A1B0GX49 114 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 LINC01549A6NIU2 74 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 A8MZ25 164 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 CIDEAO60543 219 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 SAMD5Q5TGI4 173 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 MRPL52Q86TS9 123 aaKnown RBP9.74□□□□□ -0.85
PTPRF-202ENST00000372405 FAM104AQ969W3 186 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 OPRPNQ99935 248 aaPredicted RBP9.74□□□□□ -0.85
PTPRF-202ENST00000372405 SNHG12Q9BXW3 62 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 TRGV4A0A0C4DH28 118 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 PRSS29PA6NIE9 313 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 HSBP1L1C9JCN9 74 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 IGKCP01834 107 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 UBE2D3P61077 147 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 UBE2D2P62837 147 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 TMEM141Q96I45 108 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 MDFIQ99750 246 aa9.74□□□□□ -0.85
PTPRF-202ENST00000372405 GAGE12JA6NER3 117 aa9.73□□□□□ -0.85
PTPRF-202ENST00000372405 F8VRH5 84 aa9.73□□□□□ -0.85
PTPRF-202ENST00000372405 DPM2O94777 84 aa9.73□□□□□ -0.85
PTPRF-202ENST00000372405 RPL36AP83881 106 aaKnown RBP9.73□□□□□ -0.85
PTPRF-202ENST00000372405 GAGE1Q13065 139 aa9.73□□□□□ -0.85
PTPRF-202ENST00000372405 GAGE4Q13068 117 aa9.73□□□□□ -0.85
PTPRF-202ENST00000372405 GAGE5Q13069 117 aa9.73□□□□□ -0.85
PTPRF-202ENST00000372405 GAGE13Q4V321 117 aa9.73□□□□□ -0.85
PTPRF-202ENST00000372405 RPL36ALQ969Q0 106 aaKnown RBP9.73□□□□□ -0.85
PTPRF-202ENST00000372405 UQCR10Q9UDW1 63 aa9.73□□□□□ -0.85
PTPRF-202ENST00000372405 LYRM9A8MSI8 78 aa9.72□□□□□ -0.85
PTPRF-202ENST00000372405 M0R143 59 aa9.72□□□□□ -0.85
PTPRF-202ENST00000372405 MIFP14174 115 aa9.72□□□□□ -0.85
PTPRF-202ENST00000372405 TCTAP57738 103 aa9.72□□□□□ -0.85
PTPRF-202ENST00000372405 COTL1Q14019 142 aa9.72□□□□□ -0.85
PTPRF-202ENST00000372405 CELA1Q9UNI1 258 aa9.72□□□□□ -0.85
PTPRF-202ENST00000372405 NTM-AS1Q6ZSK4 140 aa9.72□□□□□ -0.85
PTPRF-202ENST00000372405 CHTOPQ9Y3Y2 248 aaKnown RBP9.72□□□□□ -0.85
PTPRF-202ENST00000372405 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.71□□□□□ -0.86
PTPRF-202ENST00000372405 IGKV2-29A2NJV5 120 aaPredicted RBP9.71□□□□□ -0.86
PTPRF-202ENST00000372405 CEMP1Q6PRD7 247 aaPredicted RBP9.71□□□□□ -0.86
PTPRF-202ENST00000372405 CST9LQ9H4G1 147 aa9.71□□□□□ -0.86
PTPRF-202ENST00000372405 RETNQ9HD89 108 aa9.71□□□□□ -0.86
PTPRF-202ENST00000372405 IGLV4-3A0A075B6K6 122 aa9.7□□□□□ -0.86
PTPRF-202ENST00000372405 LINC00694P0DN24 101 aa9.7□□□□□ -0.86
PTPRF-202ENST00000372405 PMVKQ15126 192 aa9.7□□□□□ -0.86
PTPRF-202ENST00000372405 IGLV4-69A0A075B6H9 119 aa9.7□□□□□ -0.86
PTPRF-202ENST00000372405 PLNP26678 52 aa9.7□□□□□ -0.86
PTPRF-202ENST00000372405 DAZ4Q86SG3 579 aaKnown RBP9.7□□□□□ -0.86
PTPRF-202ENST00000372405 DAZ3Q9NR90 486 aaKnown RBP9.7□□□□□ -0.86
PTPRF-202ENST00000372405 PYGO1Q9Y3Y4 419 aa9.7□□□□□ -0.86
PTPRF-202ENST00000372405 TENM3Q9P273 2699 aa9.7□□□□□ -0.86
PTPRF-202ENST00000372405 IGKV2D-26A0A0A0MRZ7 120 aa9.69□□□□□ -0.86
PTPRF-202ENST00000372405 UBE2D4Q9Y2X8 147 aa9.69□□□□□ -0.86
PTPRF-202ENST00000372405 COX8AP10176 69 aa9.68□□□□□ -0.86
PTPRF-202ENST00000372405 FGF6P10767 208 aa9.68□□□□□ -0.86
PTPRF-202ENST00000372405 MGAM2Q2M2H8 2515 aa9.68□□□□□ -0.86
PTPRF-202ENST00000372405 CRYBA4P53673 196 aa9.68□□□□□ -0.86
PTPRF-202ENST00000372405 PRB2P02812 416 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-202ENST00000372405 SLC25A34Q6PIV7 304 aa9.67□□□□□ -0.86
PTPRF-202ENST00000372405 SBSPONQ8IVN8 264 aa9.67□□□□□ -0.86
PTPRF-202ENST00000372405 PRADC1Q9BSG0 188 aa9.67□□□□□ -0.86
PTPRF-202ENST00000372405 C11orf86A6NJI1 115 aa9.66□□□□□ -0.86
PTPRF-202ENST00000372405 HNRNPA3P51991 378 aaKnown RBP9.66□□□□□ -0.86
PTPRF-202ENST00000372405 DAD1P61803 113 aa9.66□□□□□ -0.86
PTPRF-202ENST00000372405 PCP2Q8IVA1 136 aa9.66□□□□□ -0.86
PTPRF-202ENST00000372405 AMELXQ99217 191 aa9.66□□□□□ -0.86
PTPRF-202ENST00000372405 SPANXA1Q9NS26 97 aa9.66□□□□□ -0.86
PTPRF-202ENST00000372405 RNASE13Q5GAN3 156 aaKnown RBP9.66□□□□□ -0.86
PTPRF-202ENST00000372405 GTSF1LQ9H1H1 148 aa9.66□□□□□ -0.86
PTPRF-202ENST00000372405 SPART-AS1P0CW21 52 aa9.65□□□□□ -0.86
PTPRF-202ENST00000372405 NMUP48645 174 aa9.65□□□□□ -0.86
PTPRF-202ENST00000372405 Q6ZUT4 128 aa9.65□□□□□ -0.86
PTPRF-202ENST00000372405 TTTY13Q9BZ97 58 aa9.65□□□□□ -0.86
PTPRF-202ENST00000372405 PRO0255Q9UI72 69 aa9.65□□□□□ -0.86
PTPRF-202ENST00000372405 GYPEP15421 78 aa9.64□□□□□ -0.87
PTPRF-202ENST00000372405 BOD1L2Q8IYS8 172 aa9.64□□□□□ -0.87
PTPRF-202ENST00000372405 VCX2Q9H322 139 aa9.64□□□□□ -0.87
PTPRF-202ENST00000372405 NPSP0C0P6 89 aa9.64□□□□□ -0.87
PTPRF-202ENST00000372405 C2orf91Q6ZV80 131 aa9.64□□□□□ -0.87
PTPRF-202ENST00000372405 VSIG2Q96IQ7 327 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms