RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 NREPQ16612 68 aa11.95□□□□□ -0.5
COL17A1-202ENST00000369733 CAMK2N2Q96S95 79 aa11.95□□□□□ -0.5
COL17A1-202ENST00000369733 TRAV23DV6A0A075B6W5 121 aa11.95□□□□□ -0.5
COL17A1-202ENST00000369733 IGHV4-28A0A0C4DH34 117 aa11.95□□□□□ -0.5
COL17A1-202ENST00000369733 LINC00308Q8TCZ7 52 aa11.95□□□□□ -0.5
COL17A1-202ENST00000369733 HHLA3Q9XRX5 114 aa11.95□□□□□ -0.5
COL17A1-202ENST00000369733 IGKV2D-24A0A075B6R9 120 aa11.95□□□□□ -0.5
COL17A1-202ENST00000369733 TRBV10-1A0A0K0K1A3 114 aa11.95□□□□□ -0.5
COL17A1-202ENST00000369733 DEFB121Q5J5C9 76 aa11.94□□□□□ -0.5
COL17A1-202ENST00000369733 PRR14LQ5THK1 2151 aa11.94□□□□□ -0.5
COL17A1-202ENST00000369733 NDUFC2O95298 119 aa11.94□□□□□ -0.5
COL17A1-202ENST00000369733 CXCL5P42830 114 aa11.94□□□□□ -0.5
COL17A1-202ENST00000369733 FBXL19-AS1Q494R0 122 aa11.93□□□□□ -0.5
COL17A1-202ENST00000369733 PLXNB1O43157 2135 aa11.93□□□□□ -0.5
COL17A1-202ENST00000369733 TRBV27A0A0K0K1C4 114 aa11.93□□□□□ -0.5
COL17A1-202ENST00000369733 EBI3Q14213 229 aa11.93□□□□□ -0.5
COL17A1-202ENST00000369733 Q6ZS46 218 aa11.93□□□□□ -0.5
COL17A1-202ENST00000369733 Q8NA96 180 aa11.93□□□□□ -0.5
COL17A1-202ENST00000369733 TANC2Q9HCD6 1990 aa11.92□□□□□ -0.5
COL17A1-202ENST00000369733 CCDC179H3BU77 68 aa11.92□□□□□ -0.5
COL17A1-202ENST00000369733 UPK3BQ9BT76 320 aa11.92□□□□□ -0.5
COL17A1-202ENST00000369733 TMEM263Q8WUH6 116 aaKnown RBP11.92□□□□□ -0.5
COL17A1-202ENST00000369733 NDUFA1O15239 70 aa11.92□□□□□ -0.5
COL17A1-202ENST00000369733 MAP6D1Q9H9H5 199 aa11.91□□□□□ -0.5
COL17A1-202ENST00000369733 PRR9Q5T870 116 aa11.91□□□□□ -0.5
COL17A1-202ENST00000369733 ESM1Q9NQ30 184 aa11.91□□□□□ -0.5
COL17A1-202ENST00000369733 FSTL3O95633 263 aa11.91□□□□□ -0.5
COL17A1-202ENST00000369733 V9GYY9 64 aa11.91□□□□□ -0.5
COL17A1-202ENST00000369733 ETDCA0A1B0GVM5 59 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 CNFNQ9BYD5 112 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 ZMAT4Q9H898 229 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 K7EQG2 157 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 RMI2Q96E14 147 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 TRBV6-5A0A0K0K1A5 114 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 LMO4P61968 165 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 DIRC1Q969H9 104 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 RNASE3P12724 160 aaKnown RBP11.9□□□□□ -0.5
COL17A1-202ENST00000369733 UBE2BP63146 152 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 RPL18AQ02543 176 aaKnown RBP11.9□□□□□ -0.5
COL17A1-202ENST00000369733 C4orf3Q8WVX3 66 aa11.9□□□□□ -0.5
COL17A1-202ENST00000369733 PIK3CD-AS1Q5SR53 167 aa11.89□□□□□ -0.51
COL17A1-202ENST00000369733 C20orf197Q8N268 126 aa11.89□□□□□ -0.51
COL17A1-202ENST00000369733 A8MZ25 164 aa11.89□□□□□ -0.51
COL17A1-202ENST00000369733 SPAG11BQ08648 103 aa11.89□□□□□ -0.51
COL17A1-202ENST00000369733 TSHBP01222 138 aa11.88□□□□□ -0.51
COL17A1-202ENST00000369733 PRB2P02812 416 aaPredicted RBP11.88□□□□□ -0.51
COL17A1-202ENST00000369733 PDE6GP18545 87 aa11.88□□□□□ -0.51
COL17A1-202ENST00000369733 PYGO1Q9Y3Y4 419 aa11.88□□□□□ -0.51
COL17A1-202ENST00000369733 SLPIP03973 132 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 Q6ZTI0 123 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 LST1O00453 97 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 C10orf142B7Z368 130 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 TIRAPP58753 221 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 PROK1P58294 105 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 WFDC9Q8NEX5 89 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 NDUFA7O95182 113 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 IMUPQ9GZP8 106 aa11.87□□□□□ -0.51
COL17A1-202ENST00000369733 POLR2KP53803 58 aaKnown RBP11.86□□□□□ -0.51
COL17A1-202ENST00000369733 NRGNQ92686 78 aa11.86□□□□□ -0.51
COL17A1-202ENST00000369733 HIGD2BQ4VC39 106 aa11.86□□□□□ -0.51
COL17A1-202ENST00000369733 TIMM17BO60830 172 aa11.85□□□□□ -0.51
COL17A1-202ENST00000369733 PKIGQ9Y2B9 76 aa11.85□□□□□ -0.51
COL17A1-202ENST00000369733 H7C423 109 aa11.85□□□□□ -0.51
COL17A1-202ENST00000369733 SPART-AS1P0CW21 52 aa11.85□□□□□ -0.51
COL17A1-202ENST00000369733 FAM236DA0A1B0GTK5 79 aa11.84□□□□□ -0.51
COL17A1-202ENST00000369733 FAM236CP0DP71 79 aa11.84□□□□□ -0.51
COL17A1-202ENST00000369733 ENHOQ6UWT2 76 aa11.84□□□□□ -0.51
COL17A1-202ENST00000369733 MP68P56378 58 aa11.84□□□□□ -0.51
COL17A1-202ENST00000369733 BRK1Q8WUW1 75 aa11.84□□□□□ -0.51
COL17A1-202ENST00000369733 A0A096LNJ9 63 aa11.84□□□□□ -0.51
COL17A1-202ENST00000369733 ATP5EP2Q5VTU8 51 aa11.84□□□□□ -0.51
COL17A1-202ENST00000369733 Q8N6K4 173 aa11.84□□□□□ -0.51
COL17A1-202ENST00000369733 ANKHD1Q8IWZ3 2542 aaKnown RBP11.84□□□□□ -0.51
COL17A1-202ENST00000369733 TNFRSF13BO14836 293 aaPredicted RBP11.83□□□□□ -0.52
COL17A1-202ENST00000369733 DEFB113Q30KQ7 82 aa11.83□□□□□ -0.52
COL17A1-202ENST00000369733 NDUFS5O43920 106 aa11.82□□□□□ -0.52
COL17A1-202ENST00000369733 COX7BP24311 80 aa11.82□□□□□ -0.52
COL17A1-202ENST00000369733 IBA57-AS1B1ANH7 110 aa11.82□□□□□ -0.52
COL17A1-202ENST00000369733 KLK12Q9UKR0 248 aa11.81□□□□□ -0.52
COL17A1-202ENST00000369733 IGIPA6NJ69 53 aa11.81□□□□□ -0.52
COL17A1-202ENST00000369733 CLPSL1A2RUU4 121 aa11.81□□□□□ -0.52
COL17A1-202ENST00000369733 C9orf66Q5T8R8 295 aa11.81□□□□□ -0.52
COL17A1-202ENST00000369733 PRO0255Q9UI72 69 aa11.81□□□□□ -0.52
COL17A1-202ENST00000369733 KLLNB2CW77 178 aa11.8□□□□□ -0.52
COL17A1-202ENST00000369733 Q6Q795 121 aa11.8□□□□□ -0.52
COL17A1-202ENST00000369733 ZFHX2Q9C0A1 2572 aaPredicted RBP11.8□□□□□ -0.52
COL17A1-202ENST00000369733 EML5Q05BV3 1969 aa11.8□□□□□ -0.52
COL17A1-202ENST00000369733 CPAMD8Q8IZJ3 1885 aa11.8□□□□□ -0.52
COL17A1-202ENST00000369733 DEFB4AO15263 64 aa11.8□□□□□ -0.52
COL17A1-202ENST00000369733 UBE2D1P51668 147 aa11.8□□□□□ -0.52
COL17A1-202ENST00000369733 PTPRSQ13332 1948 aa11.79□□□□□ -0.52
COL17A1-202ENST00000369733 SERP2Q8N6R1 65 aa11.79□□□□□ -0.52
COL17A1-202ENST00000369733 CRYGDP07320 174 aa11.79□□□□□ -0.52
COL17A1-202ENST00000369733 UBE2D4Q9Y2X8 147 aa11.78□□□□□ -0.52
COL17A1-202ENST00000369733 COX7CP15954 63 aa11.78□□□□□ -0.52
COL17A1-202ENST00000369733 C9orf85Q96MD7 179 aa11.78□□□□□ -0.52
COL17A1-202ENST00000369733 FAM110AQ9BQ89 295 aa11.78□□□□□ -0.52
COL17A1-202ENST00000369733 LINC00269Q8N2A0 174 aa11.78□□□□□ -0.52
COL17A1-202ENST00000369733 FAM222AQ5U5X8 452 aa11.78□□□□□ -0.52
COL17A1-202ENST00000369733 LRP4O75096 1905 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms