RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 VSIRQ9H7M9 311 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 SND1-IT1Q9HBX3 110 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 ANKRD31Q8N7Z5 1873 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 TRBV30A0A0K0K1B3 111 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 F8VRH5 84 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 SERF1AO75920 110 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 SERTAD4-AS1Q5TG53 156 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 ATRAIDQ6UW56 229 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 GPHA2Q96T91 129 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 ZFAND2AQ8N6M9 145 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 TMEM213A2RRL7 107 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 K7ERU9 68 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 MT-ATP8P03928 68 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 RALGAPA2Q2PPJ7 1873 aa3.02□□□□□ -1.93
USH2A-202ENST00000366942 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.01□□□□□ -1.93
USH2A-202ENST00000366942 IGKV2-29A2NJV5 120 aaPredicted RBP3.01□□□□□ -1.93
USH2A-202ENST00000366942 C6orf99Q4VX62 202 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 KIF25-AS1Q9Y6Z4 181 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 SETD2Q9BYW2 2564 aaPredicted RBP3.01□□□□□ -1.93
USH2A-202ENST00000366942 CKAP5Q14008 2032 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 IGLC7A0M8Q6 106 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 D6R8Y8 96 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 SPRNQ5BIV9 151 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 COL5A3P25940 1745 aaPredicted RBP3.01□□□□□ -1.93
USH2A-202ENST00000366942 SIP14410 1827 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 SCO2A0A1W2PP80 73 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 WI2-2373I1.2A0A1W2PRP0 233 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 C2orf82Q6UX34 121 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 ZNF575Q86XF7 245 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 J3KT08 172 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 SEC61BP60468 96 aaKnown RBP3.01□□□□□ -1.93
USH2A-202ENST00000366942 WT1-ASQ06250 92 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 PSORS1C2Q9UIG4 136 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 MED12LQ86YW9 2145 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 A0A1B0GUL6 1792 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 DLEC1Q9Y238 1755 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 LCE6AA0A183 80 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 hDV103S1A0JD37 113 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 NPC2P61916 151 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 PRR13Q9NZ81 148 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 PLA2G2DQ9UNK4 145 aa3.01□□□□□ -1.93
USH2A-202ENST00000366942 ANKRD11Q6UB99 2663 aaPredicted RBP3.01□□□□□ -1.93
USH2A-202ENST00000366942 SCN5AQ14524 2016 aa3□□□□□ -1.93
USH2A-202ENST00000366942 A0A087X0K7 114 aa3□□□□□ -1.93
USH2A-202ENST00000366942 C15orf65H3BRN8 121 aa3□□□□□ -1.93
USH2A-202ENST00000366942 LINC01547P58512 204 aaPredicted RBP3□□□□□ -1.93
USH2A-202ENST00000366942 TMEM14EPQ6UXP3 125 aa3□□□□□ -1.93
USH2A-202ENST00000366942 FAM231DQ6ZW35 169 aa3□□□□□ -1.93
USH2A-202ENST00000366942 Q8N9L7 120 aa3□□□□□ -1.93
USH2A-202ENST00000366942 PPDPFQ9H3Y8 114 aa3□□□□□ -1.93
USH2A-202ENST00000366942 UQCR10Q9UDW1 63 aa3□□□□□ -1.93
USH2A-202ENST00000366942 MTCL1Q9Y4B5 1905 aaKnown RBP3□□□□□ -1.93
USH2A-202ENST00000366942 PARP14Q460N5 1801 aa3□□□□□ -1.93
USH2A-202ENST00000366942 ADAMTS9Q9P2N4 1935 aa3□□□□□ -1.93
USH2A-202ENST00000366942 BRWD1-AS2P59051 145 aa3□□□□□ -1.93
USH2A-202ENST00000366942 C22orf34Q6ZV56 151 aa3□□□□□ -1.93
USH2A-202ENST00000366942 SBSPONQ8IVN8 264 aa3□□□□□ -1.93
USH2A-202ENST00000366942 MYLKQ15746 1914 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 LAMB2P55268 1798 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 K7EIM0 57 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 GNRH2O43555 120 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 PLP1P60201 277 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 RNASE8Q8TDE3 154 aaKnown RBP2.99□□□□□ -1.93
USH2A-202ENST00000366942 SPANXB1Q9NS25 103 aaPredicted RBP2.99□□□□□ -1.93
USH2A-202ENST00000366942 X6R8D5 127 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 TICRRQ7Z2Z1 1910 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 BTCP35070 178 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 FAM104BQ5XKR9 115 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 SERP2Q8N6R1 65 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 LINC00476Q8WZB0 136 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 SLPIP03973 132 aa2.99□□□□□ -1.93
USH2A-202ENST00000366942 NOTCH1P46531 2555 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 SPINK8P0C7L1 97 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 FOXI1Q12951 378 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 SPACA4Q8TDM5 124 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 BRCA1P38398 1863 aaKnown RBP2.98□□□□□ -1.93
USH2A-202ENST00000366942 I3L2K1 104 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 IGLV1-40P01703 118 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 ECM29Q5VYK3 1845 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 Q6ZRM9 215 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 C11orf53Q8IXP5 236 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 ATRQ13535 2644 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 TMEM223A0PJW6 202 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 PARD6GQ9BYG4 376 aaPredicted RBP2.98□□□□□ -1.93
USH2A-202ENST00000366942 DLG5Q8TDM6 1919 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 BPY2O14599 106 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 GUSBP1Q15486 140 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 LINC00304Q8N9R0 145 aa2.98□□□□□ -1.93
USH2A-202ENST00000366942 A0A1B0GXF2 115 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 IBA57-AS1B1ANH7 110 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 J3QQQ9 107 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 TMEM256-PLSCR3K7ERE1 68 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 RNF151Q2KHN1 245 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 LINC00528Q8N1L1 170 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 K7EIL1 84 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 LINC00315P59091 139 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 COX6A2Q02221 97 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 FHL2Q14192 279 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 LHFPL1Q86WI0 220 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 SMIM20Q8N5G0 67 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms