RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 SDF2Q99470 211 aa-1.27□□□□□ -2.61
RNU4-28P-201ENST00000364739 PAPPA2Q9BXP8 1791 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 PTPRGP23470 1445 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 TRAV17A0A0B4J275 112 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 IGHV1-24A0A0C4DH33 117 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 TEX49A0A1B0GTD5 131 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 LINC00959A0A1B0GUT2 108 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 APOC4-APOC2K7ER74 178 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 M0QZK8 103 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 S100A6P06703 90 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 CKS2P33552 79 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 DCDP81605 110 aaKnown RBP-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 TMED4Q7Z7H5 227 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 DEFB105AQ8NG35 78 aa-1.28□□□□□ -2.61
RNU4-28P-201ENST00000364739 MYH9P35579 1960 aaKnown RBP-1.28□□□□□ -2.62
RNU4-28P-201ENST00000364739 WDR7Q9Y4E6 1490 aa-1.29□□□□□ -2.62
RNU4-28P-201ENST00000364739 ZNF670-ZNF695F2Z2N8 137 aa-1.29□□□□□ -2.62
RNU4-28P-201ENST00000364739 COX6B1P14854 86 aa-1.29□□□□□ -2.62
RNU4-28P-201ENST00000364739 HOPXQ9BPY8 73 aaPredicted RBP-1.29□□□□□ -2.62
RNU4-28P-201ENST00000364739 BET1LQ9NYM9 111 aa-1.29□□□□□ -2.62
RNU4-28P-201ENST00000364739 MAP3K1Q13233 1512 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 YTHDC2Q9H6S0 1430 aaKnown RBP-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 TRAV12-2A0A075B6T6 113 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 ZNF815PA8K554 130 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 PPP5D1E7EU14 171 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 DCUN1D2Q6PH85 259 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 OR4S1Q8NGB4 309 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 LAMTOR2Q9Y2Q5 125 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 SPCS1Q9Y6A9 102 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 CENPFP49454 3210 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 CDC42BPAQ5VT25 1732 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 SYNJ1O43426 1573 aa-1.3□□□□□ -2.62
RNU4-28P-201ENST00000364739 MAGI2Q86UL8 1455 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 GOLGA4Q13439 2230 aaKnown RBP-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 OR2H2O95918 312 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 SPINK8P0C7L1 97 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 SSBP3-AS1Q7Z2R9 100 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 SMIM11BQ8TCY0 68 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 BRK1Q8WUW1 75 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 MAFIPQ8WZ33 124 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 LXNQ9BS40 222 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 STOML2Q9UJZ1 356 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 AKAP11Q9UKA4 1901 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 BCORQ6W2J9 1755 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 CASZ1Q86V15 1759 aa-1.31□□□□□ -2.62
RNU4-28P-201ENST00000364739 CICQ96RK0 1608 aaPredicted RBP-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 SYNMO15061 1565 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 MAP1LC3B2A6NCE7 125 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 HBDP02042 147 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 NEFHP12036 1026 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 SERPINB1P30740 379 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 UBE2DNLQ8IWF7 75 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 CBLN4Q9NTU7 201 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 KIF13AQ9H1H9 1805 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 ZNF609O15014 1411 aa-1.32□□□□□ -2.62
RNU4-28P-201ENST00000364739 EIF3AQ14152 1382 aaKnown RBP-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 PLXNB2O15031 1838 aa-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 TRBV7-6A0A0J9YX20 115 aa-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 LOC107984640A0A0U1RRK4 108 aa-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 IFNGP01579 166 aa-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 APOC1P02654 83 aa-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 SRP9P49458 86 aaKnown RBP-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 STX12Q86Y82 276 aa-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 PPP1R1CQ8WVI7 109 aa-1.33□□□□□ -2.62
RNU4-28P-201ENST00000364739 HAMPP81172 84 aa-1.34□□□□□ -2.62
RNU4-28P-201ENST00000364739 PRLHP81277 87 aa-1.34□□□□□ -2.62
RNU4-28P-201ENST00000364739 PIGYQ3MUY2 71 aa-1.34□□□□□ -2.62
RNU4-28P-201ENST00000364739 SELENOSQ9BQE4 189 aa-1.34□□□□□ -2.62
RNU4-28P-201ENST00000364739 TRAPPC2LQ9UL33 140 aa-1.34□□□□□ -2.62
RNU4-28P-201ENST00000364739 MED31Q9Y3C7 131 aa-1.34□□□□□ -2.62
RNU4-28P-201ENST00000364739 ABCC10Q5T3U5 1492 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 MAGI1Q96QZ7 1491 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 ZCCHC11Q5TAX3 1644 aaKnown RBP-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 TRBV6-1A0A0K0K1D8 114 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 LINC01546A6NGU7 62 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 IFNA21P01568 189 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 APODP05090 189 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 FGF7P21781 194 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 PCBD1P61457 104 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 DEFB136Q30KP8 78 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 C3orf33Q6P1S2 294 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 COX6B2Q6YFQ2 88 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 SNX29P2Q8IUI4 249 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 ASPMQ8IZT6 3477 aa-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 ZNF142P52746 1687 aaPredicted RBP-1.35□□□□□ -2.63
RNU4-28P-201ENST00000364739 BRCA2P51587 3418 aa-1.36□□□□□ -2.63
RNU4-28P-201ENST00000364739 CXorf51AA0A1B0GTR3 108 aa-1.36□□□□□ -2.63
RNU4-28P-201ENST00000364739 LSM3P62310 102 aaKnown RBP-1.36□□□□□ -2.63
RNU4-28P-201ENST00000364739 SBF2Q86WG5 1849 aa-1.36□□□□□ -2.63
RNU4-28P-201ENST00000364739 NKTRP30414 1462 aaKnown RBP-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 CDH23Q9H251 3354 aa-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 ZNF236Q9UL36 1845 aa-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 H7BZZ5 65 aa-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 TNP1P09430 55 aa-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 UBE2D3P61077 147 aa-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 NPC2P61916 151 aa-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 UBE2D2P62837 147 aa-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 CCDC32Q9BV29 185 aa-1.37□□□□□ -2.63
RNU4-28P-201ENST00000364739 APLNQ9ULZ1 77 aa-1.37□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms