RNA–Protein interactions for RNA: ENST00000359895.6

PDLIM7-203, Transcript of PDZ and LIM domain 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDLIM7, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-203ENST00000359895 NIPBLQ6KC79 2804 aaeCLIP13.2□□□□□ -0.32e-9■■■□□ 14.8
PDLIM7-203ENST00000359895 MYMXA0A1B0GTQ4 84 aa13.2□□□□□ -0.3
PDLIM7-203ENST00000359895 GIG44P09565 113 aaPredicted RBP13.2□□□□□ -0.3
PDLIM7-203ENST00000359895 Q6ZVH6 145 aa13.2□□□□□ -0.3
PDLIM7-203ENST00000359895 C16orf74Q96GX8 76 aa13.2□□□□□ -0.3
PDLIM7-203ENST00000359895 H3BRM9 83 aa13.19□□□□□ -0.3
PDLIM7-203ENST00000359895 RPL35AP18077 110 aaKnown RBP13.19□□□□□ -0.3
PDLIM7-203ENST00000359895 DAZ2Q13117 558 aaKnown RBP13.19□□□□□ -0.3
PDLIM7-203ENST00000359895 NFE4Q86UQ8 179 aa13.19□□□□□ -0.3
PDLIM7-203ENST00000359895 PRADC1Q9BSG0 188 aa13.19□□□□□ -0.3
PDLIM7-203ENST00000359895 TRAV4A0A0B4J268 109 aa13.18□□□□□ -0.3
PDLIM7-203ENST00000359895 WFDC10AQ9H1F0 79 aa13.18□□□□□ -0.3
PDLIM7-203ENST00000359895 VCX2Q9H322 139 aa13.18□□□□□ -0.3
PDLIM7-203ENST00000359895 IGLV4-3A0A075B6K6 122 aa13.17□□□□□ -0.3
PDLIM7-203ENST00000359895 INSL3P51460 131 aa13.17□□□□□ -0.3
PDLIM7-203ENST00000359895 CIDEAO60543 219 aa13.16□□□□□ -0.3
PDLIM7-203ENST00000359895 UBE2V1Q13404 147 aa13.16□□□□□ -0.3
PDLIM7-203ENST00000359895 COTL1Q14019 142 aa13.16□□□□□ -0.3
PDLIM7-203ENST00000359895 SPANXA1Q9NS26 97 aa13.16□□□□□ -0.3
PDLIM7-203ENST00000359895 TRBV10-1A0A0K0K1A3 114 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 GCSHP23434 173 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 VAMP3Q15836 100 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 CEND1Q8N111 149 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 CSNK1G2-AS1Q8NCQ2 148 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 TM2D2Q9BX73 214 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 RRN3P1Q2M238 152 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 TMEM170BQ5T4T1 132 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 Q6ZTI0 123 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 ZNRF2Q8NHG8 242 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 OPRPNQ99935 248 aaPredicted RBP13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 CHCHD7Q9BUK0 85 aa13.15□□□□□ -0.3
PDLIM7-203ENST00000359895 CRLF1O75462 422 aa13.14□□□□□ -0.31
PDLIM7-203ENST00000359895 PTTG1IPP53801 180 aa13.14□□□□□ -0.31
PDLIM7-203ENST00000359895 EMP1P54849 157 aa13.14□□□□□ -0.31
PDLIM7-203ENST00000359895 C9orf66Q5T8R8 295 aa13.14□□□□□ -0.31
PDLIM7-203ENST00000359895 ZNF479Q96JC4 524 aa13.14□□□□□ -0.31
PDLIM7-203ENST00000359895 AMELXQ99217 191 aa13.14□□□□□ -0.31
PDLIM7-203ENST00000359895 ZNF815PA8K554 130 aa13.13□□□□□ -0.31
PDLIM7-203ENST00000359895 K7EQD1 137 aa13.13□□□□□ -0.31
PDLIM7-203ENST00000359895 OVOL2Q9BRP0 275 aa13.13□□□□□ -0.31
PDLIM7-203ENST00000359895 NOP10Q9NPE3 64 aaKnown RBP13.13□□□□□ -0.31
PDLIM7-203ENST00000359895 Q9UF83 564 aa13.13□□□□□ -0.31
PDLIM7-203ENST00000359895 TRBV7-3A0A075B6L6 115 aa13.12□□□□□ -0.31
PDLIM7-203ENST00000359895 C9orf118A6NHY6 69 aa13.12□□□□□ -0.31
PDLIM7-203ENST00000359895 SMIM13P0DJ93 91 aa13.12□□□□□ -0.31
PDLIM7-203ENST00000359895 RPL36AP83881 106 aaKnown RBP13.12□□□□□ -0.31
PDLIM7-203ENST00000359895 KRTAP21-3Q3LHN1 58 aa13.12□□□□□ -0.31
PDLIM7-203ENST00000359895 RPL36ALQ969Q0 106 aaKnown RBP13.12□□□□□ -0.31
PDLIM7-203ENST00000359895 HIST1H4GQ99525 98 aa13.12□□□□□ -0.31
PDLIM7-203ENST00000359895 PLAC8L1A1L4L8 177 aa13.11□□□□□ -0.31
PDLIM7-203ENST00000359895 FXYD2P54710 66 aa13.11□□□□□ -0.31
PDLIM7-203ENST00000359895 UBE2D4Q9Y2X8 147 aa13.11□□□□□ -0.31
PDLIM7-203ENST00000359895 PHLDA1Q8WV24 401 aaPredicted RBP13.11□□□□□ -0.31
PDLIM7-203ENST00000359895 TMEM223A0PJW6 202 aa13.1□□□□□ -0.31
PDLIM7-203ENST00000359895 DAZ4Q86SG3 579 aaKnown RBP13.1□□□□□ -0.31
PDLIM7-203ENST00000359895 TIMM21Q9BVV7 248 aa13.1□□□□□ -0.31
PDLIM7-203ENST00000359895 DAZ3Q9NR90 486 aaKnown RBP13.1□□□□□ -0.31
PDLIM7-203ENST00000359895 IGHV3-38A0A0C4DH36 116 aa13.09□□□□□ -0.31
PDLIM7-203ENST00000359895 LEPROTO15243 131 aa13.09□□□□□ -0.31
PDLIM7-203ENST00000359895 CCL25O15444 150 aa13.09□□□□□ -0.31
PDLIM7-203ENST00000359895 SCGB1D4Q6XE38 83 aa13.09□□□□□ -0.31
PDLIM7-203ENST00000359895 A0A0J9YXV3 536 aa13.08□□□□□ -0.32
PDLIM7-203ENST00000359895 ZNF22P17026 224 aaPredicted RBP13.08□□□□□ -0.32
PDLIM7-203ENST00000359895 MRPS36P82909 103 aaKnown RBP13.08□□□□□ -0.32
PDLIM7-203ENST00000359895 AMMECR1LQ6DCA0 310 aa13.08□□□□□ -0.32
PDLIM7-203ENST00000359895 FAM104AQ969W3 186 aa13.08□□□□□ -0.32
PDLIM7-203ENST00000359895 JMJD1CQ15652 2540 aa13.08□□□□□ -0.32
PDLIM7-203ENST00000359895 TRGV2A0A075B6R0 118 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 IGKV2-29A2NJV5 120 aaPredicted RBP13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 LGALS3P17931 250 aaKnown RBP13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 GAGE12BA1L429 117 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 J3QQQ9 107 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 GAGE7O76087 117 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 GAGE12FP0CL80 117 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 GAGE12GP0CL81 117 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 GAGE12IP0CL82 117 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 SMAGPQ0VAQ4 97 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 SLC25A29Q8N8R3 303 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 PLEKHB2Q96CS7 222 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 CITED1Q99966 193 aa13.07□□□□□ -0.32
PDLIM7-203ENST00000359895 UBE2D3P61077 147 aa13.06□□□□□ -0.32
PDLIM7-203ENST00000359895 UBE2D2P62837 147 aa13.06□□□□□ -0.32
PDLIM7-203ENST00000359895 CEMP1Q6PRD7 247 aaPredicted RBP13.06□□□□□ -0.32
PDLIM7-203ENST00000359895 TINCRA0A1B0GVN0 87 aa13.05□□□□□ -0.32
PDLIM7-203ENST00000359895 TRBV6-4A0A1B0GX49 114 aa13.05□□□□□ -0.32
PDLIM7-203ENST00000359895 H3BUT2 72 aa13.05□□□□□ -0.32
PDLIM7-203ENST00000359895 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.05□□□□□ -0.32
PDLIM7-203ENST00000359895 RAB37Q96AX2 223 aa13.05□□□□□ -0.32
PDLIM7-203ENST00000359895 NHP2Q9NX24 153 aaKnown RBP13.05□□□□□ -0.32
PDLIM7-203ENST00000359895 K7EP13 123 aa13.04□□□□□ -0.32
PDLIM7-203ENST00000359895 DGAT2L7PQ6IED9 249 aa13.04□□□□□ -0.32
PDLIM7-203ENST00000359895 SMIM9A6NGZ8 99 aa13.03□□□□□ -0.32
PDLIM7-203ENST00000359895 TSPEAR-AS2P59090 65 aa13.03□□□□□ -0.32
PDLIM7-203ENST00000359895 GTF2H5Q6ZYL4 71 aa13.03□□□□□ -0.32
PDLIM7-203ENST00000359895 SPANXB1Q9NS25 103 aaPredicted RBP13.03□□□□□ -0.32
PDLIM7-203ENST00000359895 A0A0J9YY99 117 aa13.03□□□□□ -0.32
PDLIM7-203ENST00000359895 TMEM238LA0A1B0GVL6 79 aa13.03□□□□□ -0.32
PDLIM7-203ENST00000359895 A6NJY4 79 aa13.03□□□□□ -0.32
PDLIM7-203ENST00000359895 SRSF9Q13242 221 aaKnown RBP eCLIP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 141.8 ms