RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 MRPS12O15235 138 aaKnown RBP8.74□□□□□ -1.01
VPS39-201ENST00000318006 TRIAP1O43715 76 aa8.74□□□□□ -1.01
VPS39-201ENST00000318006 ATP5EP2Q5VTU8 51 aa8.74□□□□□ -1.01
VPS39-201ENST00000318006 EIF4EBP1Q13541 118 aaPredicted RBP8.73□□□□□ -1.01
VPS39-201ENST00000318006 Q6ZQT7 251 aa8.73□□□□□ -1.01
VPS39-201ENST00000318006 LINC00310P59036 64 aa8.73□□□□□ -1.01
VPS39-201ENST00000318006 UFSP1Q6NVU6 142 aa8.73□□□□□ -1.01
VPS39-201ENST00000318006 HIVEP2P31629 2446 aa8.73□□□□□ -1.01
VPS39-201ENST00000318006 K7EMT4 169 aa8.72□□□□□ -1.01
VPS39-201ENST00000318006 LMO4P61968 165 aa8.72□□□□□ -1.01
VPS39-201ENST00000318006 PIEZO2Q9H5I5 2752 aa8.72□□□□□ -1.01
VPS39-201ENST00000318006 C1orf229Q6ZS94 237 aaPredicted RBP8.72□□□□□ -1.01
VPS39-201ENST00000318006 Q8N976 141 aa8.72□□□□□ -1.01
VPS39-201ENST00000318006 ODF3BA8MYP8 253 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 INSL3P51460 131 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 HIGD2BQ4VC39 106 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 PKIGQ9Y2B9 76 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 SONP18583 2426 aaKnown RBP8.71□□□□□ -1.01
VPS39-201ENST00000318006 ETDCA0A1B0GVM5 59 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 TMEM223A0PJW6 202 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 NDUFC2-KCTD14E9PQ53 114 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 CXCL5P42830 114 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 V9GYY9 64 aa8.71□□□□□ -1.01
VPS39-201ENST00000318006 WNK1Q9H4A3 2382 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 NDUFS5O43920 106 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 FSTL3O95633 263 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 APRG1Q8IVJ8 170 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 FAM240AA0A1B0GVK7 77 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 ZNF22P17026 224 aaPredicted RBP8.71□□□□□ -1.02
VPS39-201ENST00000318006 MYCNOSP40205 109 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 GPHB5Q86YW7 130 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 SERP2Q8N6R1 65 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 NUP210LQ5VU65 1888 aa8.71□□□□□ -1.02
VPS39-201ENST00000318006 DSCAML1Q8TD84 2053 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 IGHV4OR15-8A0A075B7B6 117 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 A0A087WW49 117 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 DEFB1P60022 68 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 TMEM89A2RUT3 159 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 NCR3O14931 201 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 CEMP1Q6PRD7 247 aaPredicted RBP8.7□□□□□ -1.02
VPS39-201ENST00000318006 LRRC75A-AS1Q8N1F1 130 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 TLN1Q9Y490 2541 aaKnown RBP8.7□□□□□ -1.02
VPS39-201ENST00000318006 Q6Q795 121 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 SVIPQ8NHG7 77 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 RNF185Q96GF1 192 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 C16orf74Q96GX8 76 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 CAMK2N2Q96S95 79 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 PRORYQ9H606 182 aa8.7□□□□□ -1.02
VPS39-201ENST00000318006 NAV2Q8IVL1 2488 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 COX7CP15954 63 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 CRIP1P50238 77 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 UBE2BP63146 152 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 MRPL55Q7Z7F7 128 aaKnown RBP8.69□□□□□ -1.02
VPS39-201ENST00000318006 MPLKIPQ8TAP9 179 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 DIRC1Q969H9 104 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 RMI2Q96E14 147 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 TNRC6BQ9UPQ9 1833 aaKnown RBP8.69□□□□□ -1.02
VPS39-201ENST00000318006 IGLV10-54A0A075B6I4 117 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 A6NDX4 124 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 IGHV3-30P01768 117 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 IGHV3-30-5P0DP03 117 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 GYPEP15421 78 aa8.69□□□□□ -1.02
VPS39-201ENST00000318006 A0A0U1RQV1 116 aa8.68□□□□□ -1.02
VPS39-201ENST00000318006 RPL18AQ02543 176 aaKnown RBP8.68□□□□□ -1.02
VPS39-201ENST00000318006 C19orf84I3L1E1 186 aa8.68□□□□□ -1.02
VPS39-201ENST00000318006 UNQ9165/PRO28630Q6UXU0 137 aa8.68□□□□□ -1.02
VPS39-201ENST00000318006 CCDC168Q8NDH2 2452 aa8.68□□□□□ -1.02
VPS39-201ENST00000318006 LINC00308Q8TCZ7 52 aa8.67□□□□□ -1.02
VPS39-201ENST00000318006 ENHOQ6UWT2 76 aa8.67□□□□□ -1.02
VPS39-201ENST00000318006 TNFRSF13BO14836 293 aaPredicted RBP8.67□□□□□ -1.02
VPS39-201ENST00000318006 CHD7Q9P2D1 2997 aa8.67□□□□□ -1.02
VPS39-201ENST00000318006 USP17L23D6RBM5 183 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 IGKV2D-24A0A075B6R9 120 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 A0A0J9YX75 114 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 NDUFB1O75438 58 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 MYO18BQ8IUG5 2567 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 BRCA2P51587 3418 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 MKI67P46013 3256 aaKnown RBP8.66□□□□□ -1.02
VPS39-201ENST00000318006 IGLV4-3A0A075B6K6 122 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 TRBV10-1A0A0K0K1A3 114 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 CCDC140Q96MF4 163 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 CHKB-CPT1BH3BT56 60 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 FAM110AQ9BQ89 295 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 CDKN2A-AS1Q9UH64 79 aa8.66□□□□□ -1.02
VPS39-201ENST00000318006 M0QXV9 152 aa8.65□□□□□ -1.02
VPS39-201ENST00000318006 LST1O00453 97 aa8.65□□□□□ -1.02
VPS39-201ENST00000318006 C5orf42Q9H799 3197 aa8.65□□□□□ -1.02
VPS39-201ENST00000318006 LINC01548A6NM66 108 aa8.65□□□□□ -1.02
VPS39-201ENST00000318006 BPY2O14599 106 aa8.65□□□□□ -1.02
VPS39-201ENST00000318006 IGLV2-11P01706 119 aa8.65□□□□□ -1.02
VPS39-201ENST00000318006 ATP5EP56381 51 aaPredicted RBP8.65□□□□□ -1.02
VPS39-201ENST00000318006 NDUFA1O15239 70 aa8.65□□□□□ -1.02
VPS39-201ENST00000318006 SPTSSBQ8NFR3 76 aa8.65□□□□□ -1.02
VPS39-201ENST00000318006 NAV3Q8IVL0 2385 aa8.64□□□□□ -1.03
VPS39-201ENST00000318006 NDUFC1O43677 76 aa8.64□□□□□ -1.03
VPS39-201ENST00000318006 CLPSL1A2RUU4 121 aa8.64□□□□□ -1.03
VPS39-201ENST00000318006 SPAG11BQ08648 103 aa8.64□□□□□ -1.03
VPS39-201ENST00000318006 C9orf66Q5T8R8 295 aa8.64□□□□□ -1.03
VPS39-201ENST00000318006 LY6LH3BQJ8 138 aa8.64□□□□□ -1.03
VPS39-201ENST00000318006 LINC00694P0DN24 101 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms