RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 WDR87Q6ZQQ6 2873 aa4.87□□□□□ -1.63
ZNF540-201ENST00000316433 ARFGEF3Q5TH69 2177 aa4.87□□□□□ -1.63
ZNF540-201ENST00000316433 NDUFA4O00483 81 aa4.87□□□□□ -1.63
ZNF540-201ENST00000316433 TRBV12-3P01733 135 aa4.87□□□□□ -1.63
ZNF540-201ENST00000316433 ADORA2A-AS1P86434 159 aa4.87□□□□□ -1.63
ZNF540-201ENST00000316433 MRPL55Q7Z7F7 128 aaKnown RBP4.87□□□□□ -1.63
ZNF540-201ENST00000316433 MPLKIPQ8TAP9 179 aa4.87□□□□□ -1.63
ZNF540-201ENST00000316433 C11orf21Q9P2W6 132 aa4.87□□□□□ -1.63
ZNF540-201ENST00000316433 ADARB2-AS1A8MUL3 147 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 F8WEM9 126 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 GRNP28799 593 aaKnown RBP4.86□□□□□ -1.63
ZNF540-201ENST00000316433 RPL39P62891 51 aaKnown RBP4.86□□□□□ -1.63
ZNF540-201ENST00000316433 FAM19A3Q7Z5A8 133 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 Q8N2B8 174 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 USMG5Q96IX5 58 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 TRAV7A0A075B6U4 112 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 KLLNB2CW77 178 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 APELAP0DMC3 54 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 VMO1Q7Z5L0 202 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 DEFB108BQ8NET1 73 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 BPESC1Q9GZL8 116 aa4.86□□□□□ -1.63
ZNF540-201ENST00000316433 ZNF318Q5VUA4 2279 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 PLXNB1O43157 2135 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 IGHV3-30-3P0DP02 117 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 C14orf132Q9NPU4 83 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 TRBV27A0A0K0K1C4 114 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 POLR2KP53803 58 aaKnown RBP4.85□□□□□ -1.63
ZNF540-201ENST00000316433 LINC00315P59091 139 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 NDPQ00604 133 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 ATP5EP2Q5VTU8 51 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 ZFAND2AQ8N6M9 145 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 CCDC140Q96MF4 163 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 DNAJC13O75165 2243 aa4.85□□□□□ -1.63
ZNF540-201ENST00000316433 TRAV21A0A0B4J279 112 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 MGPP08493 103 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 SOSTDC1Q6X4U4 206 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 RMI2Q96E14 147 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 BCE1O60756 84 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 RNASE4P34096 147 aaKnown RBP4.84□□□□□ -1.63
ZNF540-201ENST00000316433 FAM229BQ4G0N7 80 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 IGFL4Q6B9Z1 124 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 GPHB5Q86YW7 130 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 SNURFQ9Y675 71 aa4.84□□□□□ -1.63
ZNF540-201ENST00000316433 WDFY3Q8IZQ1 3526 aa4.84□□□□□ -1.64
ZNF540-201ENST00000316433 POLEQ07864 2286 aa4.84□□□□□ -1.64
ZNF540-201ENST00000316433 TRAV13-2A0A0B4J235 113 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 NDUFC1O43677 76 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 CCL17Q92583 94 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 NDUFA12Q9UI09 145 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 S100A7L2Q5SY68 101 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 C5orf56Q8N8D9 126 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 WFDC9Q8NEX5 89 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 FAM218AQ96MZ4 157 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 IBA57-AS1B1ANH7 110 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 BLCAPP62952 87 aa4.83□□□□□ -1.64
ZNF540-201ENST00000316433 A0A0J9YXV3 536 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 DEFB124Q8NES8 71 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 DEFB104AQ8WTQ1 72 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 OBSCN-AS1Q96MR7 158 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 Q9HAA7 133 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 IGLV1-40P01703 118 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 DAD1P61803 113 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 C9orf129Q5T035 196 aaKnown RBP4.82□□□□□ -1.64
ZNF540-201ENST00000316433 Q9UF83 564 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 MALRD1Q5VYJ5 2156 aa4.82□□□□□ -1.64
ZNF540-201ENST00000316433 PRAC2D3DTV9 90 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 ENHOQ6UWT2 76 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 OPRPNQ99935 248 aaPredicted RBP4.81□□□□□ -1.64
ZNF540-201ENST00000316433 TRBV10-3A0A0K0K1G6 114 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 VCYO14598 125 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 C6orf223Q8N319 242 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 DEFB123Q8N688 67 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 RBM12B-AS1Q9P1G2 102 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 FRYLO94915 3013 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 IGHV1-58A0A0C4DH39 117 aa4.81□□□□□ -1.64
ZNF540-201ENST00000316433 TNRC18O15417 2968 aaPredicted RBP4.81□□□□□ -1.64
ZNF540-201ENST00000316433 C11orf45Q8TAV5 145 aa4.8□□□□□ -1.64
ZNF540-201ENST00000316433 VPS13AQ96RL7 3174 aa4.8□□□□□ -1.64
ZNF540-201ENST00000316433 ESRGQ1W209 222 aa4.8□□□□□ -1.64
ZNF540-201ENST00000316433 ARHGAP32A7KAX9 2087 aa4.79□□□□□ -1.64
ZNF540-201ENST00000316433 IGLV5-45A0A087WSX0 123 aa4.79□□□□□ -1.64
ZNF540-201ENST00000316433 DMDP11532 3685 aa4.79□□□□□ -1.64
ZNF540-201ENST00000316433 IGHV3-72A0A0B4J1Y9 119 aa4.79□□□□□ -1.64
ZNF540-201ENST00000316433 RNASE3P12724 160 aaKnown RBP4.79□□□□□ -1.64
ZNF540-201ENST00000316433 C15orf32Q32M92 178 aa4.79□□□□□ -1.64
ZNF540-201ENST00000316433 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.79□□□□□ -1.64
ZNF540-201ENST00000316433 LINC00308Q8TCZ7 52 aa4.79□□□□□ -1.64
ZNF540-201ENST00000316433 OVOL2Q9BRP0 275 aa4.79□□□□□ -1.64
ZNF540-201ENST00000316433 PHLDA3Q9Y5J5 127 aa4.79□□□□□ -1.64
ZNF540-201ENST00000316433 HOXD3P31249 432 aaPredicted RBP4.78□□□□□ -1.64
ZNF540-201ENST00000316433 TM2D3Q9BRN9 247 aa4.78□□□□□ -1.64
ZNF540-201ENST00000316433 S100A4P26447 101 aaKnown RBP4.78□□□□□ -1.64
ZNF540-201ENST00000316433 LMO4P61968 165 aa4.78□□□□□ -1.64
ZNF540-201ENST00000316433 LPAL2Q16609 132 aa4.78□□□□□ -1.64
ZNF540-201ENST00000316433 PLCE1Q9P212 2302 aa4.78□□□□□ -1.64
ZNF540-201ENST00000316433 FREM2Q5SZK8 3169 aa4.78□□□□□ -1.64
ZNF540-201ENST00000316433 A6NDX4 124 aa4.78□□□□□ -1.64
ZNF540-201ENST00000316433 ABCA1O95477 2261 aa4.77□□□□□ -1.65
ZNF540-201ENST00000316433 IGLV4-3A0A075B6K6 122 aa4.77□□□□□ -1.65
ZNF540-201ENST00000316433 A0A087WZ39 114 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms