RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 IFI27L1Q96BM0 104 aa9.98□□□□□ -0.81
SS18-201ENST00000269137 A0A1B0GV90 55 aa9.98□□□□□ -0.81
SS18-201ENST00000269137 ATP5LO75964 103 aa9.98□□□□□ -0.81
SS18-201ENST00000269137 PRB2P02812 416 aaPredicted RBP9.98□□□□□ -0.81
SS18-201ENST00000269137 SPART-AS1P0CW21 52 aa9.98□□□□□ -0.81
SS18-201ENST00000269137 RPL36AP83881 106 aaKnown RBP9.98□□□□□ -0.81
SS18-201ENST00000269137 RPL36ALQ969Q0 106 aaKnown RBP9.98□□□□□ -0.81
SS18-201ENST00000269137 TEX48A0A1B0GUV7 120 aa9.97□□□□□ -0.81
SS18-201ENST00000269137 C2orf66Q6UXQ4 117 aa9.97□□□□□ -0.81
SS18-201ENST00000269137 DAD1P61803 113 aa9.96□□□□□ -0.81
SS18-201ENST00000269137 KRTAP21-3Q3LHN1 58 aa9.96□□□□□ -0.81
SS18-201ENST00000269137 ZNRF2Q8NHG8 242 aa9.96□□□□□ -0.81
SS18-201ENST00000269137 RETNQ9HD89 108 aa9.96□□□□□ -0.81
SS18-201ENST00000269137 CELA1Q9UNI1 258 aa9.96□□□□□ -0.81
SS18-201ENST00000269137 CYSLTR1Q9Y271 337 aa9.96□□□□□ -0.81
SS18-201ENST00000269137 UBE2D3P61077 147 aa9.96□□□□□ -0.82
SS18-201ENST00000269137 UBE2D2P62837 147 aa9.96□□□□□ -0.82
SS18-201ENST00000269137 SBSPONQ8IVN8 264 aa9.96□□□□□ -0.82
SS18-201ENST00000269137 PRADC1Q9BSG0 188 aa9.96□□□□□ -0.82
SS18-201ENST00000269137 HHLA3Q9XRX5 114 aa9.96□□□□□ -0.82
SS18-201ENST00000269137 LINC01545Q5VT33 79 aa9.95□□□□□ -0.82
SS18-201ENST00000269137 DAZ4Q86SG3 579 aaKnown RBP9.95□□□□□ -0.82
SS18-201ENST00000269137 C11orf68Q9H3H3 251 aaKnown RBP9.95□□□□□ -0.82
SS18-201ENST00000269137 DAZ3Q9NR90 486 aaKnown RBP9.95□□□□□ -0.82
SS18-201ENST00000269137 TENM3Q9P273 2699 aa9.94□□□□□ -0.82
SS18-201ENST00000269137 ERASQ7Z444 233 aa9.94□□□□□ -0.82
SS18-201ENST00000269137 C20orf203Q8NBC4 194 aa9.94□□□□□ -0.82
SS18-201ENST00000269137 DEFB104AQ8WTQ1 72 aa9.94□□□□□ -0.82
SS18-201ENST00000269137 SCGB3A1Q96QR1 104 aa9.94□□□□□ -0.82
SS18-201ENST00000269137 PRO0255Q9UI72 69 aa9.94□□□□□ -0.82
SS18-201ENST00000269137 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.93□□□□□ -0.82
SS18-201ENST00000269137 COTL1Q14019 142 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 Q6ZN92 141 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 ZMAT4Q9H898 229 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 GAGE12JA6NER3 117 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 ATP5G1P05496 136 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 LINC00694P0DN24 101 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 HNRNPA3P51991 378 aaKnown RBP9.93□□□□□ -0.82
SS18-201ENST00000269137 CRYBA4P53673 196 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 GAGE1Q13065 139 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 GAGE4Q13068 117 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 GAGE5Q13069 117 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 GAGE13Q4V321 117 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 DEFB121Q5J5C9 76 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 LGALS9CQ6DKI2 356 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 PHLDA1Q8WV24 401 aaPredicted RBP9.93□□□□□ -0.82
SS18-201ENST00000269137 SPATA25Q9BR10 227 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 TM2D3Q9BRN9 247 aa9.93□□□□□ -0.82
SS18-201ENST00000269137 IGIPA6NJ69 53 aa9.92□□□□□ -0.82
SS18-201ENST00000269137 H0Y8G0 127 aa9.92□□□□□ -0.82
SS18-201ENST00000269137 RPL39P62891 51 aaKnown RBP9.92□□□□□ -0.82
SS18-201ENST00000269137 TIMM17AQ99595 171 aa9.92□□□□□ -0.82
SS18-201ENST00000269137 IGHV3-38A0A0C4DH36 116 aa9.91□□□□□ -0.82
SS18-201ENST00000269137 LOC100131303A0A0U1RQF7 123 aa9.91□□□□□ -0.82
SS18-201ENST00000269137 hDV102S1A0JD36 115 aa9.91□□□□□ -0.82
SS18-201ENST00000269137 PRSS1P07477 247 aa9.91□□□□□ -0.82
SS18-201ENST00000269137 TMEM141Q96I45 108 aa9.91□□□□□ -0.82
SS18-201ENST00000269137 CHCHD7Q9BUK0 85 aa9.91□□□□□ -0.82
SS18-201ENST00000269137 DNHD1Q96M86 4753 aa9.91□□□□□ -0.82
SS18-201ENST00000269137 HSBP1L1C9JCN9 74 aa9.91□□□□□ -0.82
SS18-201ENST00000269137 MRPS16Q9Y3D3 137 aaKnown RBP9.91□□□□□ -0.82
SS18-201ENST00000269137 C12orf74Q32Q52 190 aa9.9□□□□□ -0.82
SS18-201ENST00000269137 GTSF1LQ9H1H1 148 aa9.9□□□□□ -0.82
SS18-201ENST00000269137 TRAV12-1A0A0B4J245 112 aa9.89□□□□□ -0.83
SS18-201ENST00000269137 ODF1Q14990 250 aa9.89□□□□□ -0.83
SS18-201ENST00000269137 PMCHL2Q9BQD1 86 aa9.89□□□□□ -0.83
SS18-201ENST00000269137 PYGO1Q9Y3Y4 419 aa9.89□□□□□ -0.83
SS18-201ENST00000269137 HUWE1Q7Z6Z7 4374 aaKnown RBP9.89□□□□□ -0.83
SS18-201ENST00000269137 PAX4O43316 350 aa9.89□□□□□ -0.83
SS18-201ENST00000269137 GYPEP15421 78 aa9.89□□□□□ -0.83
SS18-201ENST00000269137 NPSP0C0P6 89 aa9.88□□□□□ -0.83
SS18-201ENST00000269137 NTM-AS1Q6ZSK4 140 aa9.88□□□□□ -0.83
SS18-201ENST00000269137 BAALCQ8WXS3 180 aa9.88□□□□□ -0.83
SS18-201ENST00000269137 VSIG2Q96IQ7 327 aa9.88□□□□□ -0.83
SS18-201ENST00000269137 A0A087WX48 190 aa9.87□□□□□ -0.83
SS18-201ENST00000269137 A0A0J9YWU9 116 aa9.87□□□□□ -0.83
SS18-201ENST00000269137 F5H768 121 aa9.87□□□□□ -0.83
SS18-201ENST00000269137 BATFQ16520 125 aa9.87□□□□□ -0.83
SS18-201ENST00000269137 TMEM97Q5BJF2 176 aa9.87□□□□□ -0.83
SS18-201ENST00000269137 LINC00469Q8N7U9 141 aa9.87□□□□□ -0.83
SS18-201ENST00000269137 MRAPQ8TCY5 172 aa9.87□□□□□ -0.83
SS18-201ENST00000269137 SPANXA1Q9NS26 97 aa9.86□□□□□ -0.83
SS18-201ENST00000269137 SLC25A34Q6PIV7 304 aa9.86□□□□□ -0.83
SS18-201ENST00000269137 TIMM21Q9BVV7 248 aa9.86□□□□□ -0.83
SS18-201ENST00000269137 DNAH9Q9NYC9 4486 aa9.86□□□□□ -0.83
SS18-201ENST00000269137 TRAV26-1A0A087WT03 109 aa9.85□□□□□ -0.83
SS18-201ENST00000269137 PRSS29PA6NIE9 313 aa9.85□□□□□ -0.83
SS18-201ENST00000269137 PMVKQ15126 192 aa9.85□□□□□ -0.83
SS18-201ENST00000269137 PAPPA-AS1Q5QFB9 102 aa9.85□□□□□ -0.83
SS18-201ENST00000269137 COL5A1-AS1Q5SY13 56 aa9.85□□□□□ -0.83
SS18-201ENST00000269137 ATP6V0E2Q8NHE4 81 aa9.85□□□□□ -0.83
SS18-201ENST00000269137 UBE2D4Q9Y2X8 147 aa9.85□□□□□ -0.83
SS18-201ENST00000269137 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.84□□□□□ -0.83
SS18-201ENST00000269137 IGKV2-29A2NJV5 120 aaPredicted RBP9.84□□□□□ -0.83
SS18-201ENST00000269137 HTN3P15516 51 aa9.84□□□□□ -0.83
SS18-201ENST00000269137 MRPL35Q9NZE8 188 aaKnown RBP9.84□□□□□ -0.83
SS18-201ENST00000269137 IGLV4-3A0A075B6K6 122 aa9.84□□□□□ -0.83
SS18-201ENST00000269137 TRBV25-1A0A075B6N4 114 aa9.84□□□□□ -0.83
SS18-201ENST00000269137 TRBV6-8A0A0A6YYG3 113 aa9.84□□□□□ -0.83
SS18-201ENST00000269137 A0A0J9YY99 117 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms