RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 DAZ4Q86SG3 579 aaKnown RBP12.45□□□□□ -0.42
CLN3-259ENST00000637551 CHCHD7Q9BUK0 85 aa12.45□□□□□ -0.42
CLN3-259ENST00000637551 KRTAP1-5Q9BYS1 174 aa12.45□□□□□ -0.42
CLN3-259ENST00000637551 DAZ3Q9NR90 486 aaKnown RBP12.45□□□□□ -0.42
CLN3-259ENST00000637551 F5H697 171 aa12.44□□□□□ -0.42
CLN3-259ENST00000637551 LAGE3Q14657 143 aa12.44□□□□□ -0.42
CLN3-259ENST00000637551 UQCC3Q6UW78 93 aa12.44□□□□□ -0.42
CLN3-259ENST00000637551 WFDC10BQ8IUB3 73 aa12.44□□□□□ -0.42
CLN3-259ENST00000637551 NEXN-AS1Q8NBZ9 246 aa12.44□□□□□ -0.42
CLN3-259ENST00000637551 V9GYV3 84 aa12.44□□□□□ -0.42
CLN3-259ENST00000637551 MUC21A0A0G2JKD1 596 aa12.43□□□□□ -0.42
CLN3-259ENST00000637551 MUC21A0A140T8X8 626 aa12.43□□□□□ -0.42
CLN3-259ENST00000637551 HIGD1CA8MV81 97 aa12.43□□□□□ -0.42
CLN3-259ENST00000637551 M0QY20 66 aa12.43□□□□□ -0.42
CLN3-259ENST00000637551 PKIAP61925 76 aa12.43□□□□□ -0.42
CLN3-259ENST00000637551 TWIST1Q15672 202 aa12.43□□□□□ -0.42
CLN3-259ENST00000637551 OR10J3Q5JRS4 329 aa12.43□□□□□ -0.42
CLN3-259ENST00000637551 MSRB1Q9NZV6 116 aa12.43□□□□□ -0.42
CLN3-259ENST00000637551 DNAH2Q9P225 4427 aa12.42□□□□□ -0.42
CLN3-259ENST00000637551 A0A1B0GUT8 65 aa12.42□□□□□ -0.42
CLN3-259ENST00000637551 PRSS29PA6NIE9 313 aa12.42□□□□□ -0.42
CLN3-259ENST00000637551 ADIRFQ15847 76 aa12.42□□□□□ -0.42
CLN3-259ENST00000637551 IFITM2Q01629 132 aa12.41□□□□□ -0.42
CLN3-259ENST00000637551 RASL11AQ6T310 242 aa12.41□□□□□ -0.42
CLN3-259ENST00000637551 NAT8BQ9UHF3 227 aa12.41□□□□□ -0.42
CLN3-259ENST00000637551 A0A1B0GW15 77 aa12.4□□□□□ -0.42
CLN3-259ENST00000637551 Q9UF83 564 aa12.4□□□□□ -0.42
CLN3-259ENST00000637551 A0A1B0GVY2 172 aa12.39□□□□□ -0.43
CLN3-259ENST00000637551 SMIM27A0A1W2PRY6 76 aa12.39□□□□□ -0.43
CLN3-259ENST00000637551 PPP1R2P9O14990 202 aa12.39□□□□□ -0.43
CLN3-259ENST00000637551 SUMO4Q6EEV6 95 aa12.39□□□□□ -0.43
CLN3-259ENST00000637551 PGLYRP4Q96LB8 373 aa12.39□□□□□ -0.43
CLN3-259ENST00000637551 TMEM191AQ9H0A3 160 aa12.39□□□□□ -0.43
CLN3-259ENST00000637551 NIT2Q9NQR4 276 aa12.39□□□□□ -0.43
CLN3-259ENST00000637551 PKHD1P08F94 4074 aa12.39□□□□□ -0.43
CLN3-259ENST00000637551 DNAH17Q9UFH2 4485 aa12.38□□□□□ -0.43
CLN3-259ENST00000637551 TRBV6-8A0A0A6YYG3 113 aa12.38□□□□□ -0.43
CLN3-259ENST00000637551 IBA57-AS1B1ANH7 110 aa12.38□□□□□ -0.43
CLN3-259ENST00000637551 MGPP08493 103 aa12.38□□□□□ -0.43
CLN3-259ENST00000637551 TNFRSF18Q9Y5U5 241 aa12.38□□□□□ -0.43
CLN3-259ENST00000637551 FAT2Q9NYQ8 4349 aa12.38□□□□□ -0.43
CLN3-259ENST00000637551 SSTP61278 116 aa12.37□□□□□ -0.43
CLN3-259ENST00000637551 RIGQ13278 110 aa12.37□□□□□ -0.43
CLN3-259ENST00000637551 KCNIP4Q6PIL6 250 aa12.37□□□□□ -0.43
CLN3-259ENST00000637551 Q6ZRN7 208 aaPredicted RBP12.37□□□□□ -0.43
CLN3-259ENST00000637551 ELOBQ15370 118 aa12.36□□□□□ -0.43
CLN3-259ENST00000637551 NIT1Q86X76 327 aa12.36□□□□□ -0.43
CLN3-259ENST00000637551 NUP35Q8NFH5 326 aa12.36□□□□□ -0.43
CLN3-259ENST00000637551 S100A8P05109 93 aa12.35□□□□□ -0.43
CLN3-259ENST00000637551 URGCP-MRPS24S4R325 110 aa12.35□□□□□ -0.43
CLN3-259ENST00000637551 PPP1R17O96001 155 aa12.34□□□□□ -0.43
CLN3-259ENST00000637551 IQCJQ1A5X6 159 aa12.34□□□□□ -0.43
CLN3-259ENST00000637551 ANAPC16Q96DE5 110 aa12.34□□□□□ -0.43
CLN3-259ENST00000637551 MRAP2Q96G30 205 aa12.34□□□□□ -0.43
CLN3-259ENST00000637551 TRBV25-1A0A075B6N4 114 aa12.33□□□□□ -0.44
CLN3-259ENST00000637551 TRAV8-3A0A0A6YYJ7 113 aa12.33□□□□□ -0.44
CLN3-259ENST00000637551 TRBV6-5A0A0K0K1A5 114 aa12.33□□□□□ -0.44
CLN3-259ENST00000637551 ATP5L2Q7Z4Y8 100 aa12.33□□□□□ -0.44
CLN3-259ENST00000637551 COX11Q9Y6N1 276 aa12.33□□□□□ -0.44
CLN3-259ENST00000637551 NCR2O95944 276 aa12.32□□□□□ -0.44
CLN3-259ENST00000637551 MT-ND4LP03901 98 aa12.32□□□□□ -0.44
CLN3-259ENST00000637551 GATD1Q8NB37 220 aa12.32□□□□□ -0.44
CLN3-259ENST00000637551 A0A087WX48 190 aa12.31□□□□□ -0.44
CLN3-259ENST00000637551 DYNC1H1Q14204 4646 aaKnown RBP12.3□□□□□ -0.44
CLN3-259ENST00000637551 IGHV1-24A0A0C4DH33 117 aa12.3□□□□□ -0.44
CLN3-259ENST00000637551 TMEM218A2RU14 115 aa12.3□□□□□ -0.44
CLN3-259ENST00000637551 TNP2Q05952 138 aa12.3□□□□□ -0.44
CLN3-259ENST00000637551 TM2D2Q9BX73 214 aa12.3□□□□□ -0.44
CLN3-259ENST00000637551 SEC11CQ9BY50 192 aa12.3□□□□□ -0.44
CLN3-259ENST00000637551 KRTAP4-5Q9BYR2 181 aa12.3□□□□□ -0.44
CLN3-259ENST00000637551 LINC00862A6NCI5 91 aa12.29□□□□□ -0.44
CLN3-259ENST00000637551 Q0VG73 95 aa12.29□□□□□ -0.44
CLN3-259ENST00000637551 RMI2Q96E14 147 aa12.29□□□□□ -0.44
CLN3-259ENST00000637551 EREGO14944 169 aa12.28□□□□□ -0.44
CLN3-259ENST00000637551 HBBP68871 147 aa12.28□□□□□ -0.44
CLN3-259ENST00000637551 COTL1Q14019 142 aa12.28□□□□□ -0.44
CLN3-259ENST00000637551 NTM-AS1Q6ZSK4 140 aa12.28□□□□□ -0.44
CLN3-259ENST00000637551 IMMP2LQ96T52 175 aa12.28□□□□□ -0.44
CLN3-259ENST00000637551 A0A1B0GUV1 79 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 A0A1B0GXF2 115 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 F8W036 122 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 H7C423 109 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 IGHV3-30P01768 117 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 IGHV3-33P01772 117 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 IGHV3-30-3P0DP02 117 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 IGHV3-30-5P0DP03 117 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 RAB4AP20338 218 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 ATRAIDQ6UW56 229 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 RNF185Q96GF1 192 aa12.27□□□□□ -0.45
CLN3-259ENST00000637551 DNAH11Q96DT5 4516 aa12.26□□□□□ -0.45
CLN3-259ENST00000637551 FAM104BQ5XKR9 115 aa12.26□□□□□ -0.45
CLN3-259ENST00000637551 CDPF1Q6NVV7 123 aa12.26□□□□□ -0.45
CLN3-259ENST00000637551 CHCHD5Q9BSY4 110 aa12.26□□□□□ -0.45
CLN3-259ENST00000637551 TMEM243Q9BU79 118 aa12.26□□□□□ -0.45
CLN3-259ENST00000637551 CTDSP1Q9GZU7 261 aa12.26□□□□□ -0.45
CLN3-259ENST00000637551 PKD1P98161 4303 aa12.26□□□□□ -0.45
CLN3-259ENST00000637551 TRAV26-2A0A0B4J265 109 aa12.25□□□□□ -0.45
CLN3-259ENST00000637551 SDHAF1A6NFY7 115 aa12.25□□□□□ -0.45
CLN3-259ENST00000637551 COMMD7Q86VX2 200 aa12.25□□□□□ -0.45
CLN3-259ENST00000637551 TRAV9-1A0A075B6T8 112 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms