RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 OR4C5Q8NGB2 326 aa12.07□□□□□ -0.48
CLN3-252ENST00000636907 ZMAT5Q9UDW3 170 aaKnown RBP12.07□□□□□ -0.48
CLN3-252ENST00000636907 HSPB8Q9UJY1 196 aa12.07□□□□□ -0.48
CLN3-252ENST00000636907 SDHAF1A6NFY7 115 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 SMIM9A6NGZ8 99 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 H7C1H1 209 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 P0DMU3 169 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 FAM231AP0DMU4 169 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 FAM231CP0DMU5 169 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 BTF3P20290 206 aaKnown RBP12.06□□□□□ -0.48
CLN3-252ENST00000636907 EMP1P54849 157 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 ZNF479Q96JC4 524 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 TRAV4A0A0B4J268 109 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 GAGE12BA1L429 117 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 GAGE7O76087 117 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 GAGE12FP0CL80 117 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 GAGE12GP0CL81 117 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 GAGE12IP0CL82 117 aa12.06□□□□□ -0.48
CLN3-252ENST00000636907 IGHV3-53P01767 116 aa12.05□□□□□ -0.48
CLN3-252ENST00000636907 SAMD5Q5TGI4 173 aa12.05□□□□□ -0.48
CLN3-252ENST00000636907 SYS1-DBNDD2H3BUS1 97 aa12.04□□□□□ -0.48
CLN3-252ENST00000636907 VCYO14598 125 aa12.04□□□□□ -0.48
CLN3-252ENST00000636907 ORMDL2Q53FV1 153 aa12.04□□□□□ -0.48
CLN3-252ENST00000636907 SPATA12Q7Z6I5 190 aa12.04□□□□□ -0.48
CLN3-252ENST00000636907 MAP1LC3CQ9BXW4 147 aa12.04□□□□□ -0.48
CLN3-252ENST00000636907 Q9UF83 564 aa12.04□□□□□ -0.48
CLN3-252ENST00000636907 TRBV27A0A0K0K1C4 114 aa12.03□□□□□ -0.48
CLN3-252ENST00000636907 K7EMI3 77 aa12.03□□□□□ -0.48
CLN3-252ENST00000636907 OR11H2Q8NH07 326 aa12.03□□□□□ -0.48
CLN3-252ENST00000636907 DEFB104AQ8WTQ1 72 aa12.03□□□□□ -0.48
CLN3-252ENST00000636907 DNAH3Q8TD57 4116 aa12.03□□□□□ -0.48
CLN3-252ENST00000636907 TRGV2A0A075B6R0 118 aa12.03□□□□□ -0.48
CLN3-252ENST00000636907 A8MZ25 164 aa12.03□□□□□ -0.48
CLN3-252ENST00000636907 NUDT3O95989 172 aa12.03□□□□□ -0.48
CLN3-252ENST00000636907 NEXN-AS1Q8NBZ9 246 aa12.02□□□□□ -0.49
CLN3-252ENST00000636907 RNF183Q96D59 192 aa12.02□□□□□ -0.49
CLN3-252ENST00000636907 C18orf15Q96N68 181 aa12.02□□□□□ -0.49
CLN3-252ENST00000636907 KIR2DL4Q99706 377 aa12.01□□□□□ -0.49
CLN3-252ENST00000636907 H0Y8G0 127 aa12□□□□□ -0.49
CLN3-252ENST00000636907 LINC00612Q8N6U2 182 aa12□□□□□ -0.49
CLN3-252ENST00000636907 IFI27L1Q96BM0 104 aa12□□□□□ -0.49
CLN3-252ENST00000636907 TNFRSF18Q9Y5U5 241 aa12□□□□□ -0.49
CLN3-252ENST00000636907 IGHV4-28A0A0C4DH34 117 aa12□□□□□ -0.49
CLN3-252ENST00000636907 I3L3M4 83 aa12□□□□□ -0.49
CLN3-252ENST00000636907 S100A12P80511 92 aa12□□□□□ -0.49
CLN3-252ENST00000636907 PET117Q6UWS5 81 aa12□□□□□ -0.49
CLN3-252ENST00000636907 TEX43Q6ZNM6 134 aa12□□□□□ -0.49
CLN3-252ENST00000636907 NBEAL2Q6ZNJ1 2754 aa11.99□□□□□ -0.49
CLN3-252ENST00000636907 DEFB4AO15263 64 aa11.99□□□□□ -0.49
CLN3-252ENST00000636907 DEFB130BP0DP73 79 aa11.99□□□□□ -0.49
CLN3-252ENST00000636907 DEFB130AP0DP74 79 aa11.99□□□□□ -0.49
CLN3-252ENST00000636907 DNAJC30Q96LL9 226 aa11.99□□□□□ -0.49
CLN3-252ENST00000636907 K7EQD1 137 aa11.98□□□□□ -0.49
CLN3-252ENST00000636907 TSHBP01222 138 aa11.98□□□□□ -0.49
CLN3-252ENST00000636907 Q8NAQ8 132 aa11.98□□□□□ -0.49
CLN3-252ENST00000636907 TOMM6Q96B49 74 aa11.98□□□□□ -0.49
CLN3-252ENST00000636907 CIDEAO60543 219 aa11.97□□□□□ -0.49
CLN3-252ENST00000636907 MIFP14174 115 aa11.97□□□□□ -0.49
CLN3-252ENST00000636907 FAM222AQ5U5X8 452 aa11.97□□□□□ -0.49
CLN3-252ENST00000636907 C2orf66Q6UXQ4 117 aa11.97□□□□□ -0.49
CLN3-252ENST00000636907 SLC25A29Q8N8R3 303 aa11.97□□□□□ -0.49
CLN3-252ENST00000636907 LYRM9A8MSI8 78 aa11.97□□□□□ -0.49
CLN3-252ENST00000636907 LINC01545Q5VT33 79 aa11.97□□□□□ -0.49
CLN3-252ENST00000636907 ATOH7Q8N100 152 aa11.97□□□□□ -0.49
CLN3-252ENST00000636907 C20orf202A1L168 122 aa11.96□□□□□ -0.5
CLN3-252ENST00000636907 PCP4L1A6NKN8 68 aa11.96□□□□□ -0.5
CLN3-252ENST00000636907 ATP5LO75964 103 aa11.96□□□□□ -0.5
CLN3-252ENST00000636907 RIPPLY3P57055 190 aa11.96□□□□□ -0.5
CLN3-252ENST00000636907 FHL2Q14192 279 aa11.96□□□□□ -0.5
CLN3-252ENST00000636907 TRGV4A0A0C4DH28 118 aa11.95□□□□□ -0.5
CLN3-252ENST00000636907 TRBV10-1A0A0K0K1A3 114 aa11.95□□□□□ -0.5
CLN3-252ENST00000636907 RHOHQ15669 191 aa11.95□□□□□ -0.5
CLN3-252ENST00000636907 ZNF664Q8N3J9 261 aa11.95□□□□□ -0.5
CLN3-252ENST00000636907 ZNRF2Q8NHG8 242 aa11.95□□□□□ -0.5
CLN3-252ENST00000636907 PMCHL2Q9BQD1 86 aa11.95□□□□□ -0.5
CLN3-252ENST00000636907 DKK2Q9UBU2 259 aa11.95□□□□□ -0.5
CLN3-252ENST00000636907 CYSLTR1Q9Y271 337 aa11.95□□□□□ -0.5
CLN3-252ENST00000636907 SCGB3A1Q96QR1 104 aa11.94□□□□□ -0.5
CLN3-252ENST00000636907 TP53TG1Q9Y2A0 90 aa11.94□□□□□ -0.5
CLN3-252ENST00000636907 TRBV7-3A0A075B6L6 115 aa11.94□□□□□ -0.5
CLN3-252ENST00000636907 IGHV3-38A0A0C4DH36 116 aa11.94□□□□□ -0.5
CLN3-252ENST00000636907 TRBV6-4A0A1B0GX49 114 aa11.94□□□□□ -0.5
CLN3-252ENST00000636907 PRB2P02812 416 aaPredicted RBP11.94□□□□□ -0.5
CLN3-252ENST00000636907 G0S2P27469 103 aa11.94□□□□□ -0.5
CLN3-252ENST00000636907 RPL39P62891 51 aaKnown RBP11.94□□□□□ -0.5
CLN3-252ENST00000636907 PHLDA1Q8WV24 401 aaPredicted RBP11.94□□□□□ -0.5
CLN3-252ENST00000636907 VAMP8Q9BV40 100 aa11.94□□□□□ -0.5
CLN3-252ENST00000636907 RETNQ9HD89 108 aa11.94□□□□□ -0.5
CLN3-252ENST00000636907 PRSS1P07477 247 aa11.93□□□□□ -0.5
CLN3-252ENST00000636907 RPL36AP83881 106 aaKnown RBP11.93□□□□□ -0.5
CLN3-252ENST00000636907 LGALS9CQ6DKI2 356 aa11.93□□□□□ -0.5
CLN3-252ENST00000636907 RPL36ALQ969Q0 106 aaKnown RBP11.93□□□□□ -0.5
CLN3-252ENST00000636907 PRO1933Q9H354 126 aa11.93□□□□□ -0.5
CLN3-252ENST00000636907 CELA1Q9UNI1 258 aa11.93□□□□□ -0.5
CLN3-252ENST00000636907 GAGE12JA6NER3 117 aa11.92□□□□□ -0.5
CLN3-252ENST00000636907 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.92□□□□□ -0.5
CLN3-252ENST00000636907 GAGE1Q13065 139 aa11.92□□□□□ -0.5
CLN3-252ENST00000636907 GAGE4Q13068 117 aa11.92□□□□□ -0.5
CLN3-252ENST00000636907 GAGE5Q13069 117 aa11.92□□□□□ -0.5
CLN3-252ENST00000636907 GAGE13Q4V321 117 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms